evokedsetmodel.cpp

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//=============================================================================================================
 
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "evokedsetmodel.h"
 
#include <fiff/fiff_info.h>
#include <fiff/fiff_evoked_set.h>
 
//=============================================================================================================
// QT INCLUDES
//=============================================================================================================
 
#include <QtConcurrent>
#include <QFuture>
#include <QPair>
#include <QColor>
 
//=============================================================================================================
// EIGEN INCLUDES
//=============================================================================================================
 
//=============================================================================================================
// STL INCLUDES
//=============================================================================================================
 
#include <iostream>
 
//=============================================================================================================
// USED NAMESPACES
//=============================================================================================================
 
using namespace DISPLIB;
using namespace FIFFLIB;
using namespace Eigen;
 
//=============================================================================================================
// DEFINE MEMBER METHODS
//=============================================================================================================
 
EvokedSetModel::EvokedSetModel(QObject* parent)
: QAbstractTableModel(parent)
, m_qMapAverageColor(QSharedPointer<QMap<QString, QColor>>::create())
, m_qMapAverageActivation(QSharedPointer<QMap<QString, bool>>::create())
, m_qMapAverageColorOld(QSharedPointer<QMap<QString, QColor>>::create())
, m_qMapAverageActivationOld(QSharedPointer<QMap<QString, bool>>::create())
, m_bIsInit(false)
, m_bIsFreezed(false)
, m_bProjActivated(false)
, m_bCompActivated(false)
, m_fSps(1024.0f)
{
}
 
//=============================================================================================================
 
EvokedSetModel::~EvokedSetModel()
{
}
 
//=============================================================================================================
//virtual functions
int EvokedSetModel::rowCount(const QModelIndex& /*parent*/) const
{
    if (m_pEvokedSet) {
        return m_pEvokedSet->info.nchan;
    }
 
    return 0;
}
 
//=============================================================================================================
 
int EvokedSetModel::columnCount(const QModelIndex& /*parent*/) const
{
    return 3;
}
 
//=============================================================================================================
 
QVariant EvokedSetModel::data(const QModelIndex& index, int role) const
{
    if (role != Qt::DisplayRole && role != Qt::BackgroundRole && role != EvokedSetModelRoles::GetAverageData) {
        return QVariant();
    }
 
    if (index.isValid()) {
        qint32 row = m_qMapIdxRowSelection[index.row()];
 
        //******** first column (chname) ********
        if (index.column() == 0 && role == Qt::DisplayRole) {
            return QVariant(m_pEvokedSet->info.ch_names);
        }
 
        //******** second column (butterfly data plot) ********
        //TODO: Bring this into a better structure see colum three
        if (index.column() == 1) {
            QVariant v;
 
            QList<DISPLIB::AvrTypeRowVector> lRowDataPerTrigType;
            DISPLIB::AvrTypeRowVector pairItem;
 
            switch (role) {
                case Qt::DisplayRole: {
                    //pack all adjacent (after reload) RowVectorPairs into a QList
 
                    if (m_bIsFreezed) {
                        // data freeze
                        for (int i = 0; i < m_matDataFreeze.size(); ++i) {
                            pairItem.first = m_lAvrTypesFreeze.at(i);
                            pairItem.second = m_matDataFreeze.at(i).row(row);
                            lRowDataPerTrigType.append(pairItem);
                        }
                    } else {
                        // data stream
                        for (int i = 0; i < m_matData.size(); ++i) {
                            pairItem.first = m_lAvrTypes.at(i);
                            pairItem.second = m_matData.at(i).row(row);
                            lRowDataPerTrigType.append(pairItem);
                        }
                    }
 
                    v.setValue(lRowDataPerTrigType);
 
                    return v;
                }
                case Qt::BackgroundRole: {
                    //                    if(m_fiffInfo.bads.contains(m_chInfolist[row].ch_name)) {
                    //                        QBrush brush;
                    //                        brush.setStyle(Qt::SolidPattern);
                    //    //                    qDebug() << m_chInfolist[row].ch_name << "is marked as bad, index:" << row;
                    //                        brush.setColor(Qt::red);
                    //                        return QVariant(brush);
                    //                    }
                    //                    else
                    return QVariant();
                }
            } // end role switch
        } // end column check
 
        //******** third column (2D layout data plot, this third column is needed because the te data needs to be in another structure for the 2D layout to work) ********
        if (index.column() == 2) {
            QVariant v;
            QList<DISPLIB::AvrTypeRowVectorPair> lRowDataPerTrigType;
            DISPLIB::AvrTypeRowVectorPair averagedData;
 
            switch (role) {
                case EvokedSetModelRoles::GetAverageData: {
                    if (m_bIsFreezed) {
                        // data freeze
                        for (int i = 0; i < m_matDataFreeze.size(); ++i) {
                            averagedData.first = m_lAvrTypesFreeze.at(i);
                            averagedData.second.first = m_matDataFreeze.at(i).data();
                            averagedData.second.second = m_matDataFreeze.at(i).cols();
 
                            lRowDataPerTrigType.append(averagedData);
                        }
                    } else {
                        for (int i = 0; i < m_matData.size(); ++i) {
                            averagedData.first = m_lAvrTypes.at(i);
                            averagedData.second.first = m_matData.at(i).data();
                            averagedData.second.second = m_matData.at(i).cols();
 
                            lRowDataPerTrigType.append(averagedData);
                        }
                    }
 
                    v.setValue(lRowDataPerTrigType);
                }
            }
 
            return v;
        } //end column check
 
    } // end index.valid() check
 
    return QVariant();
}
 
//=============================================================================================================
 
QVariant EvokedSetModel::headerData(int section, Qt::Orientation orientation, int role) const
{
    if (role != Qt::DisplayRole && role != Qt::TextAlignmentRole) {
        return QVariant();
    }
 
    if (orientation == Qt::Horizontal) {
        switch (section) {
            case 0: //chname column
                return QVariant();
            case 1: //data plot column
                switch (role) {
                    case Qt::DisplayRole:
                        return QVariant("data plot");
                    case Qt::TextAlignmentRole:
                        return QVariant(Qt::AlignLeft);
                }
                return QVariant("data plot");
        }
    } else if (orientation == Qt::Vertical) {
        QModelIndex chname = createIndex(section, 0);
        switch (role) {
            case Qt::DisplayRole:
                return QVariant(data(chname).toString());
        }
    }
 
    return QVariant();
}
 
//=============================================================================================================
 
void EvokedSetModel::setEvokedSet(QSharedPointer<FiffEvokedSet> pEvokedSet)
{
    m_pEvokedSet = pEvokedSet;
 
    if (!m_bIsInit) {
        init();
    }
 
    updateData();
}
 
//=============================================================================================================
 
void EvokedSetModel::init()
{
    if (!m_pEvokedSet) {
        return;
    }
 
    beginResetModel();
 
    //Generate bad channel index list
    RowVectorXi sel; // = RowVectorXi(0,0);
    QStringList emptyExclude;
 
    if (m_pEvokedSet->info.bads.size() > 0) {
        sel = FiffInfoBase::pick_channels(m_pEvokedSet->info.ch_names, m_pEvokedSet->info.bads, emptyExclude);
    }
 
    m_vecBadIdcs = sel;
 
    m_fSps = m_pEvokedSet->info.sfreq;
 
    m_matSparseProjMult = SparseMatrix<double>(m_pEvokedSet->info.chs.size(), m_pEvokedSet->info.chs.size());
    m_matSparseCompMult = SparseMatrix<double>(m_pEvokedSet->info.chs.size(), m_pEvokedSet->info.chs.size());
    m_matSparseProjCompMult = SparseMatrix<double>(m_pEvokedSet->info.chs.size(), m_pEvokedSet->info.chs.size());
 
    m_matSparseProjMult.setIdentity();
    m_matSparseCompMult.setIdentity();
    m_matSparseProjCompMult.setIdentity();
 
    m_qMapAverageActivation->clear();
    m_qMapAverageColor->clear();
    m_qMapAverageActivationOld->clear();
    m_qMapAverageColorOld->clear();
 
    //Create the initial SSP projector
    updateProjection(m_pEvokedSet->info.projs);
 
    //Create the initial Compensator projector
    updateCompensator(0);
 
    endResetModel();
 
    resetSelection();
 
    m_bIsInit = true;
}
 
//=============================================================================================================
 
void EvokedSetModel::updateData()
{
    if (!m_pEvokedSet) {
        return;
    }
 
    m_matData.clear();
    m_lAvrTypes.clear();
 
    for (int i = 0; i < m_pEvokedSet->evoked.size(); ++i) {
        bool doProj = m_bProjActivated && m_pEvokedSet->evoked.at(i).data.cols() > 0 && m_pEvokedSet->evoked.at(i).data.rows() == m_matProj.cols() ? true : false;
 
        bool doComp = m_bCompActivated && m_pEvokedSet->evoked.at(i).data.cols() > 0 && m_pEvokedSet->evoked.at(i).data.rows() == m_matComp.cols() ? true : false;
 
        if (doComp) {
            if (doProj) {
                //Comp + Proj
                m_matData.append(m_matSparseProjCompMult * m_pEvokedSet->evoked.at(i).data);
            } else {
                //Comp
                m_matData.append(m_matSparseCompMult * m_pEvokedSet->evoked.at(i).data);
            }
        } else {
            if (doProj) {
                //Proj
                m_matData.append(m_matSparseProjMult * m_pEvokedSet->evoked.at(i).data);
            } else {
                //None - Raw
                m_matData.append(m_pEvokedSet->evoked.at(i).data);
            }
        }
 
        m_pairBaseline = m_pEvokedSet->evoked.at(i).baseline;
 
        m_lAvrTypes.append(m_pEvokedSet->evoked.at(i).comment);
    }
 
    // Update average selection information map. Use old colors if existing.
    QStringList slCurrentAvrComments;
    int iSizeAvrActivation = m_qMapAverageActivation->size();
    int iSizeAvrColor = m_qMapAverageColor->size();
 
    for (int i = 0; i < m_pEvokedSet->evoked.size(); ++i) {
        slCurrentAvrComments << m_pEvokedSet->evoked.at(i).comment;
 
        if (!m_qMapAverageActivation->contains(m_pEvokedSet->evoked.at(i).comment)) {
            if (m_qMapAverageActivationOld->contains(m_pEvokedSet->evoked.at(i).comment)) {
                m_qMapAverageActivation->insert(m_pEvokedSet->evoked.at(i).comment, m_qMapAverageActivationOld->value(m_pEvokedSet->evoked.at(i).comment));
            } else {
                m_qMapAverageActivation->insert(m_pEvokedSet->evoked.at(i).comment, true);
            }
        }
 
        if (!m_qMapAverageColor->contains(m_pEvokedSet->evoked.at(i).comment)) {
            if (m_qMapAverageColorOld->contains(m_pEvokedSet->evoked.at(i).comment)) {
                m_qMapAverageColor->insert(m_pEvokedSet->evoked.at(i).comment, m_qMapAverageColorOld->value(m_pEvokedSet->evoked.at(i).comment));
            } else {
                m_qMapAverageColor->insert(m_pEvokedSet->evoked.at(i).comment, Qt::yellow);
            }
        }
    }
 
    // Delete average color and activation if they are no longer present in the evoked set
    QMutableMapIterator<QString, bool> itrActivation(*m_qMapAverageActivation);
    while (itrActivation.hasNext()) {
        itrActivation.next();
        if (!slCurrentAvrComments.contains(itrActivation.key())) {
            m_qMapAverageActivationOld->insert(itrActivation.key(), itrActivation.value());
            itrActivation.remove();
        }
    }
 
    QMutableMapIterator<QString, QColor> itrColor(*m_qMapAverageColor);
    while (itrColor.hasNext()) {
        itrColor.next();
        if (!slCurrentAvrComments.contains(itrColor.key())) {
            m_qMapAverageColorOld->insert(itrColor.key(), itrColor.value());
            itrColor.remove();
        }
    }
 
    // Only emit new colors and activations if evoked types were added or deleted
    if (iSizeAvrColor != m_qMapAverageColor->size()) {
        emit newAverageColorMap(m_qMapAverageColor);
    }
 
    if (iSizeAvrActivation != m_qMapAverageActivation->size()) {
        emit newAverageActivationMap(m_qMapAverageActivation);
    }
 
    //Update data content
    QModelIndex topLeft = this->index(0, 1);
    QModelIndex bottomRight = this->index(m_pEvokedSet->info.nchan - 1, 1);
    QVector<int> roles;
    roles << Qt::DisplayRole;
 
    emit dataChanged(topLeft, bottomRight, roles);
}
 
//=============================================================================================================
 
QSharedPointer<QMap<QString, QColor>> EvokedSetModel::getAverageColor() const
{
    return m_qMapAverageColor;
}
 
//=============================================================================================================
 
QSharedPointer<QMap<QString, bool>> EvokedSetModel::getAverageActivation() const
{
    return m_qMapAverageActivation;
}
 
//=============================================================================================================
 
void EvokedSetModel::setAverageColor(const QSharedPointer<QMap<QString, QColor>> qMapAverageColor)
{
    m_qMapAverageColor = qMapAverageColor;
}
 
//=============================================================================================================
 
void EvokedSetModel::setAverageActivation(const QSharedPointer<QMap<QString, bool>> qMapAverageActivation)
{
    m_qMapAverageActivation = qMapAverageActivation;
}
 
//=============================================================================================================
 
fiff_int_t EvokedSetModel::getKind(qint32 row) const
{
    if (row < m_qMapIdxRowSelection.size()) {
        qint32 chRow = m_qMapIdxRowSelection[row];
        return m_pEvokedSet->info.chs[chRow].kind;
    }
 
    return 0;
}
 
//=============================================================================================================
 
bool EvokedSetModel::getIsChannelBad(qint32 row) const
{
    bool bIsBad = false;
 
    if (row < m_qMapIdxRowSelection.size()) {
        qint32 chRow = m_qMapIdxRowSelection[row];
        bIsBad = m_pEvokedSet->info.bads.contains(m_pEvokedSet->info.chs[chRow].ch_name);
    }
 
    return bIsBad;
}
 
//=============================================================================================================
 
fiff_int_t EvokedSetModel::getUnit(qint32 row) const
{
    if (row < m_qMapIdxRowSelection.size()) {
        qint32 chRow = m_qMapIdxRowSelection[row];
        return m_pEvokedSet->info.chs[chRow].unit;
    }
 
    return FIFF_UNIT_NONE;
}
 
//=============================================================================================================
 
fiff_int_t EvokedSetModel::getCoil(qint32 row) const
{
    if (row < m_qMapIdxRowSelection.size()) {
        qint32 chRow = m_qMapIdxRowSelection[row];
        return m_pEvokedSet->info.chs[chRow].chpos.coil_type;
    }
 
    return FIFFV_COIL_NONE;
}
 
//=============================================================================================================
 
bool EvokedSetModel::isInit() const
{
    return m_bIsInit;
}
 
//=============================================================================================================
 
qint32 EvokedSetModel::getNumSamples() const
{
    qint32 iNumSamples = 0;
 
    if (!m_matData.isEmpty()) {
        iNumSamples = m_matData.first().cols();
    }
 
    return m_bIsInit ? iNumSamples : 0;
}
 
//=============================================================================================================
 
QVariant EvokedSetModel::data(int row, int column, int role) const
{
    return data(index(row, column), role);
}
 
//=============================================================================================================
 
const QMap<qint32, qint32>& EvokedSetModel::getIdxSelMap() const
{
    return m_qMapIdxRowSelection;
}
 
//=============================================================================================================
 
qint32 EvokedSetModel::numVLines() const
{
    qint32 iNumSamples = 0;
 
    if (!m_matData.isEmpty()) {
        iNumSamples = m_matData.first().cols();
    }
 
    return (qint32)(iNumSamples / m_fSps) - 1;
}
 
//=============================================================================================================
 
qint32 EvokedSetModel::getNumPreStimSamples() const
{
    int iPreSamples = 0;
 
    if (!m_pEvokedSet) {
        return iPreSamples;
    }
 
    if (!m_pEvokedSet->evoked.isEmpty()) {
        RowVectorXf times = m_pEvokedSet->evoked.first().times;
 
        // Search for stim onset via times
        for (int i = 0; i < times.cols(); i++) {
            if (times(i) == 0.0f) {
                break;
            }
 
            iPreSamples++;
        }
    }
 
    return iPreSamples;
}
 
//=============================================================================================================
 
float EvokedSetModel::getSamplingFrequency() const
{
    return m_fSps;
}
 
//=============================================================================================================
 
bool EvokedSetModel::isFreezed() const
{
    return m_bIsFreezed;
}
 
//=============================================================================================================
 
int EvokedSetModel::getNumberOfTimeSpacers() const
{
    //std::cout<<floor((m_matData.cols()/m_fSps)*10)<<std::endl;
    qint32 iNumSamples = 0;
 
    if (!m_matData.isEmpty()) {
        iNumSamples = m_matData.first().cols();
    }
 
    return floor((iNumSamples / m_fSps) * 10);
}
 
//=============================================================================================================
 
QPair<QVariant, QVariant> EvokedSetModel::getBaselineInfo() const
{
    //qDebug()<<floor((m_matData.cols()/m_fSps)*10);
    return m_pairBaseline;
}
 
//=============================================================================================================
 
int EvokedSetModel::getNumAverages() const
{
    return m_matData.size();
}
 
//=============================================================================================================
 
void EvokedSetModel::selectRows(const QList<qint32>& selection)
{
    if (!m_pEvokedSet) {
        return;
    }
 
    beginResetModel();
 
    m_qMapIdxRowSelection.clear();
 
    qint32 count = 0;
    for (qint32 i = 0; i < selection.size(); ++i) {
        if (selection[i] < m_pEvokedSet->info.nchan) {
            m_qMapIdxRowSelection.insert(count, selection[i]);
            ++count;
        }
    }
 
    emit newSelection(selection);
 
    endResetModel();
}
 
//=============================================================================================================
 
void EvokedSetModel::resetSelection()
{
    if (!m_pEvokedSet) {
        return;
    }
 
    beginResetModel();
 
    m_qMapIdxRowSelection.clear();
 
    for (qint32 i = 0; i < m_pEvokedSet->info.nchan; ++i) {
        m_qMapIdxRowSelection.insert(i, i);
    }
 
    endResetModel();
}
 
//=============================================================================================================
 
void EvokedSetModel::updateProjection(const QList<FiffProj>& projs)
{
    if (!m_pEvokedSet) {
        return;
    }
 
    // Update the SSP projector
    if (m_pEvokedSet->info.chs.size() > 0) {
        m_pEvokedSet->info.projs = projs;
        m_bProjActivated = false;
        for (qint32 i = 0; i < projs.size(); ++i) {
            if (m_pEvokedSet->info.projs[i].active) {
                m_bProjActivated = true;
            }
        }
 
        m_pEvokedSet->info.make_projector(m_matProj);
        //qDebug() << "EvokedSetModel::updateProjection - New projection calculated. m_bProjActivated is "<<m_bProjActivated;
 
        //set columns of matrix to zero depending on bad channels indexes
        RowVectorXi sel; // = RowVectorXi(0,0);
        QStringList emptyExclude;
 
        if (m_pEvokedSet->info.bads.size() > 0) {
            sel = FiffInfoBase::pick_channels(m_pEvokedSet->info.ch_names, m_pEvokedSet->info.bads, emptyExclude);
        }
 
        m_vecBadIdcs = sel;
 
        for (qint32 j = 0; j < m_vecBadIdcs.cols(); ++j) {
            m_matProj.col(m_vecBadIdcs[j]).setZero();
        }
 
        //        qDebug() << "Bads\n" << m_vecBadIdcs;
        //        qDebug() << "Proj\n";
        //        qDebug() << m_matProj.block(0,0,10,10);
 
        qint32 nchan = m_pEvokedSet->info.nchan;
        qint32 i, k;
 
        typedef Eigen::Triplet<double> T;
        std::vector<T> tripletList;
        tripletList.reserve(nchan);
 
        //
        // Make proj sparse
        //
        tripletList.clear();
        tripletList.reserve(m_matProj.rows() * m_matProj.cols());
        for (i = 0; i < m_matProj.rows(); ++i) {
            for (k = 0; k < m_matProj.cols(); ++k) {
                if (m_matProj(i, k) != 0) {
                    tripletList.push_back(T(i, k, m_matProj(i, k)));
                }
            }
        }
 
        m_matSparseProjMult = SparseMatrix<double>(m_matProj.rows(), m_matProj.cols());
        if (tripletList.size() > 0) {
            m_matSparseProjMult.setFromTriplets(tripletList.begin(), tripletList.end());
        }
 
        //Create full multiplication matrix
        m_matSparseProjCompMult = m_matSparseProjMult * m_matSparseCompMult;
    }
}
 
//=============================================================================================================
 
void EvokedSetModel::updateCompensator(int to)
{
    if (!m_pEvokedSet) {
        return;
    }
 
    // Update the compensator
    if (m_pEvokedSet->info.chs.size() > 0) {
        if (to == 0) {
            m_bCompActivated = false;
        } else {
            m_bCompActivated = true;
        }
 
        //        qDebug()<<"to"<<to;
        //        qDebug()<<"from"<<from;
        //        qDebug()<<"m_bCompActivated"<<m_bCompActivated;
 
        FiffCtfComp newComp;
        m_pEvokedSet->info.make_compensator(0, to, newComp); //Do this always from 0 since we always read new raw data, we never actually perform a multiplication on already existing data
 
        //We do not need to call this->m_pFiffInfo->set_current_comp(to);
        //Because we will set the compensators to the coil in the same FiffInfo which is already used to write to file.
        //Note that the data is written in raw form not in compensated form.
        m_matComp = newComp.data->data;
 
        //
        // Make proj sparse
        //
        qint32 nchan = m_pEvokedSet->info.nchan;
        qint32 i, k;
 
        typedef Eigen::Triplet<double> T;
        std::vector<T> tripletList;
        tripletList.reserve(nchan);
 
        tripletList.clear();
        tripletList.reserve(m_matComp.rows() * m_matComp.cols());
        for (i = 0; i < m_matComp.rows(); ++i) {
            for (k = 0; k < m_matComp.cols(); ++k) {
                if (m_matComp(i, k) != 0) {
                    tripletList.push_back(T(i, k, m_matComp(i, k)));
                }
            }
        }
 
        m_matSparseCompMult = SparseMatrix<double>(m_matComp.rows(), m_matComp.cols());
        if (tripletList.size() > 0) {
            m_matSparseCompMult.setFromTriplets(tripletList.begin(), tripletList.end());
        }
 
        //Create full multiplication matrix
        m_matSparseProjCompMult = m_matSparseProjMult * m_matSparseCompMult;
    }
}
 
//=============================================================================================================
 
void EvokedSetModel::toggleFreeze()
{
    m_bIsFreezed = !m_bIsFreezed;
 
    if (m_bIsFreezed) {
        m_matDataFreeze = m_matData;
        m_lAvrTypesFreeze = m_lAvrTypes;
    }
 
    //Update data content
    QModelIndex topLeft = this->index(0, 1);
    QModelIndex bottomRight = this->index(this->rowCount(), 1);
    QVector<int> roles;
    roles << Qt::DisplayRole;
    emit dataChanged(topLeft, bottomRight, roles);
}
 
//=============================================================================================================
 
QSharedPointer<FIFFLIB::FiffEvokedSet> EvokedSetModel::getEvokedSet()
{
    if (!m_pEvokedSet) {
        return Q_NULLPTR;
    } else {
        return m_pEvokedSet;
    }
}