mne.cpp

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//=============================================================================================================
 
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "mne.h"
#include <fiff/fiff.h>
 
//=============================================================================================================
// QT INCLUDES
//=============================================================================================================
 
#include <QDebug>
 
//=============================================================================================================
// USED NAMESPACES
//=============================================================================================================
 
using namespace MNELIB;
using namespace Eigen;
using namespace FIFFLIB;
 
//=============================================================================================================
// DEFINE MEMBER METHODS
//=============================================================================================================
 
// read_events, read_events_from_fif, read_events_from_ascii, write_events_to_fif,
// write_events_to_ascii implementations moved to FiffEvents class in fiff_events.cpp
 
//=============================================================================================================
 
void MNE::setup_compensators(FiffRawData& raw,
                             fiff_int_t dest_comp,
                             bool keep_comp)
{
    // Set up projection
    if (raw.info.projs.size() == 0) {
        printf("No projector specified for these data\n");
    } else {
        // Activate the projection items
        for (qint32 k = 0; k < raw.info.projs.size(); ++k) {
            raw.info.projs[k].active = true;
        }
 
        printf("%lld projection items activated\n",raw.info.projs.size());
        // Create the projector
//        fiff_int_t nproj = MNE::make_projector_info(raw.info, raw.proj); Using the member function instead
        fiff_int_t nproj = raw.info.make_projector(raw.proj);
 
        if (nproj == 0)  {
            printf("The projection vectors do not apply to these channels\n");
        } else {
            printf("Created an SSP operator (subspace dimension = %d)\n",nproj);
        }
    }
 
    // Set up the CTF compensator
//    qint32 current_comp = MNE::get_current_comp(raw.info);
    qint32 current_comp = raw.info.get_current_comp();
    if (current_comp > 0)
        printf("Current compensation grade : %d\n",current_comp);
 
    if (keep_comp)
        dest_comp = current_comp;
 
    if (current_comp != dest_comp)
    {
        qDebug() << "This part needs to be debugged";
        if(MNE::make_compensator(raw.info, current_comp, dest_comp, raw.comp))
        {
//            raw.info.chs = MNE::set_current_comp(raw.info.chs,dest_comp);
            raw.info.set_current_comp(dest_comp);
            printf("Appropriate compensator added to change to grade %d.\n",dest_comp);
        }
        else
        {
            printf("Could not make the compensator\n");
            return;
        }
    }
}
 
//=============================================================================================================
 
// compute_proj implementation moved to FiffProj::compute_from_raw in fiff_proj.cpp