#include "compute_fwd.h"
#include <fiff/fiff.h>
#include <fiff/fiff_coord_trans.h>
#include "../fwd_coil_set.h"
#include "../fwd_comp_data.h"
#include <mne/mne_ctf_comp_data_set.h>
#include "../fwd_eeg_sphere_model_set.h"
#include "../fwd_bem_model.h"
#include <mne/mne_named_matrix.h>
#include <mne/mne_nearest.h>
#include <mne/mne_source_space.h>
#include <mne/mne_forwardsolution.h>
#include <fiff/fiff_sparse_matrix.h>
#include <fiff/fiff_types.h>
#include <time.h>
#include <Eigen/Dense>
#include <algorithm>
#include <QCoreApplication>
#include <QFile>
#include <QDir>
#include <QTextStream>

Include dependency graph for compute_fwd.cpp:

Macros
#define	TRUE 1
#define	FALSE 0
#define	FAIL -1
#define	OK 0
#define	X_41 0
#define	Y_41 1
#define	Z_41 2
#define	ALLOC_ICMATRIX_41(x, y)
#define	MALLOC_41(x, t)
#define	REALLOC_41(x, y, t)
#define	FREE_41(x)
#define	VEC_COPY_41(to, from)
#define	VEC_DOT_41(x, y)
#define	VEC_LEN_41(x)
#define	ALLOC_CMATRIX_41(x, y)
#define	FREE_CMATRIX_41(m)
#define	FREE_ICMATRIX_41(m)

Functions
float **	mne_cmatrix_41 (int nr, int nc)
int **	mne_imatrix_41 (int nr, int nc)
void	mne_free_cmatrix_41 (float **m)
void	mne_free_icmatrix_41 (int **m)
fiffId	get_file_id (const QString &name)
int	mne_check_chinfo (const QList< FiffChInfo > &chs, int nch)
void	write_id_old (FiffStream::SPtr &t_pStream, fiff_int_t kind, fiffId id)
void	write_coord_trans_old (FiffStream::SPtr &t_pStream, const FiffCoordTrans &trans)
void	write_coord_trans (FiffStream::SPtr &t_pStream, const FiffCoordTrans &trans)
void	mne_write_bad_channel_list_new (FiffStream::SPtr &t_pStream, const QStringList &t_badList)
void	fiff_write_float_matrix_old (FiffStream::SPtr &t_pStream, int kind, fiff_float_t **data, int rows, int cols)
void	fiff_write_int_matrix_old (FiffStream::SPtr &t_pStream, int kind, fiff_int_t **data, int rows, int cols)
int	fiff_write_float_sparse_matrix_old (FiffStream::SPtr &t_pStream, int kind, FiffSparseMatrix *mat)
FiffSparseMatrix *	mne_create_sparse_rcs (int nrow, int ncol, int nnz, int colindex, float *vals)
FiffSparseMatrix *	mne_pick_lower_triangle_rcs (FiffSparseMatrix *mat)
int	mne_write_one_source_space (FiffStream::SPtr &t_pStream, MNESourceSpace *ss, bool selected_only)
QString	mne_name_list_to_string_41 (const QStringList &list)
int	mne_write_named_matrix (FiffStream::SPtr &t_pStream, int kind, MNENamedMatrix *mat)
bool	fiff_put_dir (FiffStream::SPtr &t_pStream, const QList< FiffDirEntry::SPtr > &dir)
bool	write_solution (const QString &name, std::vector< std::unique_ptr< MNESourceSpace > > &spaces, const QString &mri_file, fiffId mri_id, const FiffCoordTrans &mri_head_t, const QString &meas_file, FiffId meas_id, const FiffCoordTrans &meg_head_t, QList< FiffChInfo > meg_chs, int nmeg, QList< FiffChInfo > eeg_chs, int neeg, int fixed_ori, int coord_frame, FiffNamedMatrix &meg_solution, FiffNamedMatrix &eeg_solution, FiffNamedMatrix &meg_solution_grad, FiffNamedMatrix &eeg_solution_grad, bool bDoGrad)
bool	mne_attach_env (const QString &name, const QString &command)

Macro Definition Documentation

◆ ALLOC_CMATRIX_41

#define ALLOC_CMATRIX_41	(		x,
			y )

Value:

mne_cmatrix_41((x),(y))

mne_cmatrix_41

float ** mne_cmatrix_41(int nr, int nc)

Definition compute_fwd.cpp:96

Definition at line 75 of file compute_fwd.cpp.

◆ ALLOC_ICMATRIX_41

#define ALLOC_ICMATRIX_41	(		x,
			y )

Value:

mne_imatrix_41((x),(y))

mne_imatrix_41

int ** mne_imatrix_41(int nr, int nc)

Definition compute_fwd.cpp:113

Definition at line 58 of file compute_fwd.cpp.

◆ FAIL

#define FAIL -1

Definition at line 47 of file compute_fwd.cpp.

◆ FALSE

#define FALSE 0

Definition at line 43 of file compute_fwd.cpp.

◆ FREE_41

#define FREE_41 ( x )

Value:

if ((char *)(x) != Q_NULLPTR) free((char *)(x))

Definition at line 63 of file compute_fwd.cpp.

◆ FREE_CMATRIX_41

#define FREE_CMATRIX_41 ( m )

Value:

mne_free_cmatrix_41((m))

mne_free_cmatrix_41

void mne_free_cmatrix_41(float **m)

Definition compute_fwd.cpp:128

Definition at line 76 of file compute_fwd.cpp.

◆ FREE_ICMATRIX_41

#define FREE_ICMATRIX_41 ( m )

Value:

mne_free_icmatrix_41((m))

mne_free_icmatrix_41

void mne_free_icmatrix_41(int **m)

Definition compute_fwd.cpp:136

Definition at line 77 of file compute_fwd.cpp.

◆ MALLOC_41

#define MALLOC_41	(		x,
			t )

Value:

(t *)malloc((x)*sizeof(t))

Definition at line 60 of file compute_fwd.cpp.

◆ OK

#define OK 0

Definition at line 51 of file compute_fwd.cpp.

◆ REALLOC_41

#define REALLOC_41	(	x,
		y,
		t )

Value:

(t *)((x == Q_NULLPTR) ? malloc((y)*sizeof(t)) : realloc((x),(y)*sizeof(t)))

Definition at line 61 of file compute_fwd.cpp.

◆ TRUE

#define TRUE 1

Definition at line 39 of file compute_fwd.cpp.

◆ VEC_COPY_41

#define VEC_COPY_41	(		to,
			from )

Value:

{\
(to)[X_41] = (from)[X_41];\
(to)[Y_41] = (from)[Y_41];\
(to)[Z_41] = (from)[Z_41];\
}

Definition at line 65 of file compute_fwd.cpp.

◆ VEC_DOT_41

#define VEC_DOT_41	(		x,
			y )

Value:

((x)[X_41]*(y)[X_41] + (x)[Y_41]*(y)[Y_41] + (x)[Z_41]*(y)[Z_41])

Definition at line 71 of file compute_fwd.cpp.

◆ VEC_LEN_41

#define VEC_LEN_41 ( x )

Value:

sqrt(VEC_DOT_41(x,x))

VEC_DOT_41

#define VEC_DOT_41(x, y)

Definition compute_fwd.cpp:71

Definition at line 73 of file compute_fwd.cpp.

◆ X_41

#define X_41 0

Definition at line 54 of file compute_fwd.cpp.

◆ Y_41

#define Y_41 1

Definition at line 55 of file compute_fwd.cpp.

◆ Z_41

#define Z_41 2

Definition at line 56 of file compute_fwd.cpp.

Function Documentation

◆ fiff_put_dir()

bool fiff_put_dir	(	FiffStream::SPtr &	t_pStream,
		const QList< FiffDirEntry::SPtr > &	dir )

Definition at line 1316 of file compute_fwd.cpp.

◆ fiff_write_float_matrix_old()

void fiff_write_float_matrix_old	(	FiffStream::SPtr &	t_pStream,
		int	kind,
		fiff_float_t **	data,
		int	rows,
		int	cols )

Definition at line 545 of file compute_fwd.cpp.

◆ fiff_write_float_sparse_matrix_old()

int fiff_write_float_sparse_matrix_old	(	FiffStream::SPtr &	t_pStream,
		int	kind,
		FiffSparseMatrix *	mat )

Definition at line 693 of file compute_fwd.cpp.

◆ fiff_write_int_matrix_old()

void fiff_write_int_matrix_old	(	FiffStream::SPtr &	t_pStream,
		int	kind,
		fiff_int_t **	data,
		int	rows,
		int	cols )

Definition at line 619 of file compute_fwd.cpp.

◆ get_file_id()

fiffId get_file_id ( const QString & name )

< File version.

< Unique machine ID.

< Time of the ID creation.

Definition at line 145 of file compute_fwd.cpp.

◆ mne_attach_env()

bool mne_attach_env	(	const QString &	name,
		const QString &	command )

Definition at line 1574 of file compute_fwd.cpp.

◆ mne_check_chinfo()

int mne_check_chinfo	(	const QList< FiffChInfo > &	chs,
		int	nch )

Definition at line 370 of file compute_fwd.cpp.

◆ mne_cmatrix_41()

float ** mne_cmatrix_41	(	int	nr,
		int	nc )

Definition at line 96 of file compute_fwd.cpp.

◆ mne_create_sparse_rcs()

FiffSparseMatrix * mne_create_sparse_rcs	(	int	nrow,
		int	ncol,
		int *	nnz,
		int **	colindex,
		float **	vals )

Definition at line 851 of file compute_fwd.cpp.

◆ mne_free_cmatrix_41()

void mne_free_cmatrix_41 ( float ** m )

Definition at line 128 of file compute_fwd.cpp.

◆ mne_free_icmatrix_41()

void mne_free_icmatrix_41 ( int ** m )

Definition at line 136 of file compute_fwd.cpp.

◆ mne_imatrix_41()

int ** mne_imatrix_41	(	int	nr,
		int	nc )

Definition at line 113 of file compute_fwd.cpp.

◆ mne_name_list_to_string_41()

QString mne_name_list_to_string_41 ( const QStringList & list )

Definition at line 1270 of file compute_fwd.cpp.

◆ mne_pick_lower_triangle_rcs()

FiffSparseMatrix * mne_pick_lower_triangle_rcs ( FiffSparseMatrix * mat )

Definition at line 907 of file compute_fwd.cpp.

◆ mne_write_bad_channel_list_new()

void mne_write_bad_channel_list_new	(	FiffStream::SPtr &	t_pStream,
		const QStringList &	t_badList )

Definition at line 505 of file compute_fwd.cpp.

◆ mne_write_named_matrix()

int mne_write_named_matrix	(	FiffStream::SPtr &	t_pStream,
		int	kind,
		MNENamedMatrix *	mat )

Definition at line 1288 of file compute_fwd.cpp.

◆ mne_write_one_source_space()

int mne_write_one_source_space	(	FiffStream::SPtr &	t_pStream,
		MNESourceSpace *	ss,
		bool	selected_only )

Definition at line 1084 of file compute_fwd.cpp.

◆ write_coord_trans()

void write_coord_trans	(	FiffStream::SPtr &	t_pStream,
		const FiffCoordTrans &	trans )

Definition at line 485 of file compute_fwd.cpp.

◆ write_coord_trans_old()

void write_coord_trans_old	(	FiffStream::SPtr &	t_pStream,
		const FiffCoordTrans &	trans )

Definition at line 441 of file compute_fwd.cpp.

◆ write_id_old()

void write_id_old	(	FiffStream::SPtr &	t_pStream,
		fiff_int_t	kind,
		fiffId	id )

Definition at line 396 of file compute_fwd.cpp.

◆ write_solution()

bool write_solution	(	const QString &	name,
		std::vector< std::unique_ptr< MNESourceSpace > > &	spaces,
		const QString &	mri_file,
		fiffId	mri_id,
		const FiffCoordTrans &	mri_head_t,
		const QString &	meas_file,
		FiffId	meas_id,
		const FiffCoordTrans &	meg_head_t,
		QList< FiffChInfo >	meg_chs,
		int	nmeg,
		QList< FiffChInfo >	eeg_chs,
		int	neeg,
		int	fixed_ori,
		int	coord_frame,
		FiffNamedMatrix &	meg_solution,
		FiffNamedMatrix &	eeg_solution,
		FiffNamedMatrix &	meg_solution_grad,
		FiffNamedMatrix &	eeg_solution_grad,
		bool	bDoGrad )

Definition at line 1374 of file compute_fwd.cpp.

Macros

Functions

Macro Definition Documentation

◆ ALLOC_CMATRIX_41

◆ ALLOC_ICMATRIX_41

◆ FAIL

◆ FALSE

◆ FREE_41

◆ FREE_CMATRIX_41

◆ FREE_ICMATRIX_41

◆ MALLOC_41

◆ OK

◆ REALLOC_41

◆ TRUE

◆ VEC_COPY_41

◆ VEC_DOT_41

◆ VEC_LEN_41

◆ X_41

◆ Y_41

◆ Z_41

Function Documentation

◆ fiff_put_dir()

◆ fiff_write_float_matrix_old()

◆ fiff_write_float_sparse_matrix_old()

◆ fiff_write_int_matrix_old()

◆ get_file_id()

◆ mne_attach_env()

◆ mne_check_chinfo()

◆ mne_cmatrix_41()

◆ mne_create_sparse_rcs()

◆ mne_free_cmatrix_41()

◆ mne_free_icmatrix_41()

◆ mne_imatrix_41()

◆ mne_name_list_to_string_41()

◆ mne_pick_lower_triangle_rcs()

◆ mne_write_bad_channel_list_new()

◆ mne_write_named_matrix()

◆ mne_write_one_source_space()

◆ write_coord_trans()

◆ write_coord_trans_old()

◆ write_id_old()

◆ write_solution()