mne_meas_data.h

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//=============================================================================================================
 
#ifndef MNEMEASDATA_H
#define MNEMEASDATA_H
 
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "../inverse_global.h"
#include <fiff/fiff_types.h>
 
#include <mne/mne_types.h>
#include <mne/mne_raw_data.h>
 
//=============================================================================================================
// EIGEN INCLUDES
//=============================================================================================================
 
#include <Eigen/Core>
 
//=============================================================================================================
// QT INCLUDES
//=============================================================================================================
 
#include <QSharedPointer>
 
#include <memory>
 
#include <QDebug>
 
//=============================================================================================================
// FORWARD DECLARATIONS
//=============================================================================================================
 
namespace FIFFLIB { class FiffCoordTrans; }
 
namespace MNELIB
{
    class MNENamedMatrix;
}
 
//=============================================================================================================
// DEFINE NAMESPACE INVERSELIB
//=============================================================================================================
 
namespace INVERSELIB
{
 
//=============================================================================================================
// INVERSELIB FORWARD DECLARATIONS
//=============================================================================================================
 
class MNEInverseOperator;
class MNEMeasDataSet;
 
//=============================================================================================================
class INVERSESHARED_EXPORT MNEMeasData
{
public:
    typedef QSharedPointer<MNEMeasData> SPtr;              
    typedef QSharedPointer<const MNEMeasData> ConstSPtr;   
 
    //=========================================================================================================
    MNEMeasData();
 
    //=========================================================================================================
    ~MNEMeasData();
 
    //=========================================================================================================
    void adjust_baselines(float bmin, float bmax);
 
    //============================= mne_read_data.c =============================
 
    static MNEMeasData* mne_read_meas_data_add(const QString&       name,       /* Name of the measurement file */
                                       int                  set,        /* Which data set */
                                       MNEInverseOperator*   op,         /* For consistency checks */
                                       MNELIB::MNENamedMatrix*       fwd,        /* Another option for consistency checks */
                                       const QStringList&   namesp,   /* Yet another option: explicit name list */
                                       int                  nnamesp,
                                       MNEMeasData*          add_to);
 
    static MNEMeasData* mne_read_meas_data(const QString&       name,       /* Name of the measurement file */
                                   int                  set,        /* Which data set */
                                   MNEInverseOperator*  op,         /* For consistency checks */
                                   MNELIB::MNENamedMatrix*      fwd,        /* Another option for consistency checks */
                                   const QStringList&   namesp,   /* Yet another option: explicit name list */
                                   int                  nnamesp);
 
public:
    QString                 filename;  /* The source file name */
    FIFFLIB::fiffId         meas_id;    /* The id from the measurement file */
    FIFFLIB::FiffTime       meas_date;  /* The measurement date from the file */
    QList<FIFFLIB::FiffChInfo>     chs;        /* The channel information */
    std::unique_ptr<FIFFLIB::FiffCoordTrans> meg_head_t; /* MEG device <-> head coordinate transformation */
    std::unique_ptr<FIFFLIB::FiffCoordTrans> mri_head_t; /* MRI device <-> head coordinate transformation (duplicated from the inverse operator or loaded separately) */
    float                   sfreq;      /* Sampling frequency */
    int                     nchan;      /* Number of channels */
    float                   highpass;   /* Highpass filter setting */
    float                   lowpass;    /* Lowpass filter setting */
    MNELIB::MNEProjOp*  proj;       /* Associated projection operator (useful if inverse operator is not included) */
    std::unique_ptr<MNELIB::MNECTFCompDataSet> comp;   
    MNEInverseOperator*     op;         /* Associated inverse operator */
    MNELIB::MNENamedMatrix*         fwd;        /* Forward operator for dipole fitting */
    MNELIB::MNERawData*             raw;        /* This will be non-null if the data stems from a raw data file */
    MNELIB::mneChSelection          chsel;      /* Channel selection for raw data */
    QStringList             badlist;  /* Bad channel names */
    int                     nbad;       /* How many? */
    int                     *bad;       /* Which channels are bad? */
    /*
     * These are the data sets loaded
     */
    int                     ch_major;   /* Rows are channels rather than times */
    QList<MNEMeasDataSet*>  sets;       /* All loaded data sets */
    int                     nset;       /* How many */
    MNEMeasDataSet*         current;    /* Which is the current one */
 
// ### OLD STRUCT ###
//typedef struct {    /* Measurement data representation in MNE calculations */
//* These are common to all data sets
//*/
//    char                    *filename;  /* The source file name */
//    FIFFLIB::fiffId         meas_id;    /* The id from the measurement file */
//    FIFFLIB::fiffTimeRec    meas_date;  /* The measurement date from the file */
//    FIFFLIB::fiffChInfo     chs;        /* The channel information */
//    INVERSELIB::FiffCoordTransOld* meg_head_t; /* MEG device <-> head coordinate transformation */
//    INVERSELIB::FiffCoordTransOld* mri_head_t; /* MRI device <-> head coordinate transformation (duplicated from the inverse operator or loaded separately) */
//    float               sfreq;      /* Sampling frequency */
//    int                 nchan;      /* Number of channels */
//    float               highpass;   /* Highpass filter setting */
//    float               lowpass;    /* Lowpass filter setting */
//    mneProjOp           proj;       /* Associated projection operator (useful if inverse operator is not included) */
//    mneCTFcompDataSet   comp;       /* The software gradient compensation data */
//    mneInverseOperator  op;         /* Associated inverse operator */
//    mneNamedMatrix      fwd;        /* Forward operator for dipole fitting */
//    mneRawData          raw;        /* This will be non-null if the data stems from a raw data file */
//    mneChSelection      chsel;      /* Channel selection for raw data */
//    char                **badlist;  /* Bad channel names */
//    int                 nbad;       /* How many? */
//    int                 *bad;       /* Which channels are bad? */
//    /*
//    * These are the data sets loaded
//    */
//    int                ch_major;            /* Rows are channels rather than times */
//    INVERSELIB::MNEMeasDataSet* *sets;      /* All loaded data sets */
//    int                nset;                /* How many */
//    INVERSELIB::MNEMeasDataSet* current;    /* Which is the current one */
//} *mneMeasData,mneMeasDataRec;
};
 
//=============================================================================================================
// INLINE DEFINITIONS
//=============================================================================================================
} // NAMESPACE INVERSELIB
 
#endif // MNEMEASDATA_H