#include <fwd/fwd_types.h>
#include "dipole_fit_data.h"
#include "guess_data.h"
#include "../c/mne_meas_data.h"
#include "../c/mne_meas_data_set.h"
#include <mne/mne_proj_item.h>
#include <mne/mne_cov_matrix.h>
#include "ecd.h"
#include <fiff/fiff_stream.h>
#include <fiff/fiff_coord_trans.h>
#include <fwd/fwd_bem_model.h>
#include <mne/mne_surface.h>
#include <fwd/fwd_comp_data.h>
#include <Eigen/Dense>
#include <QFile>
#include <QTextStream>
#include <QCoreApplication>
#include <QDebug>
#include <math.h>

Include dependency graph for dipole_fit_data.cpp:

Classes
struct	MNELIB::fitSphereUser
	Workspace for sphere-fitting optimization, holding digitizer point coordinates and count. More...
struct	MNELIB::frameNameRec_3
	Lookup record mapping a FIFF coordinate frame integer ID to its human-readable name string. More...

Namespaces
namespace	MNELIB
	Core MNE data structures (source spaces, source estimates, hemispheres).

Macros
#define	_USE_MATH_DEFINES
#define	FIFFV_COIL_CTF_OFFDIAG_REF_GRAD 5004
#define	TRUE 1
#define	FALSE 0
#define	FAIL -1
#define	OK 0
#define	X_3 0
#define	Y_3 1
#define	Z_3 2
#define	MALLOC_3(x, t)
#define	REALLOC_3(x, y, t)
#define	FREE_3(x)
#define	ALLOC_FLOAT_3(x)
#define	ALLOC_DCMATRIX_3(x, y)
#define	ALLOC_CMATRIX_3(x, y)
#define	FREE_CMATRIX_3(m)
#define	FREE_DCMATRIX_3(m)
#define	VEC_DOT_3(x, y)
#define	VEC_LEN_3(x)
#define	VEC_DIFF_3(from, to, diff)
#define	VEC_COPY_3(to, from)
#define	CROSS_PRODUCT_3(x, y, xy)
#define	MIN_3(a, b)
#define	EPS_3 0.05
#define	ALPHA 1.0
#define	BETA 0.5
#define	GAMMA 2.0
#define	USE_LIMIT 1e-5
#define	SMALL_VALUE 1e-4
#define	MAXLINE 500
#define	TOO_CLOSE 1e-4
#define	REALLY_REVERT
#define	ALPHA 1.0
#define	BETA 0.5
#define	GAMMA 2.0
#define	MIN_STOL_LOOP 5

Typedefs
typedef struct MNELIB::fitSphereUser	MNELIB::fitSphereUserRec

Functions
float **	mne_cmatrix_3 (int nr, int nc)
double **	mne_dmatrix_3 (int nr, int nc)
void	mne_free_dcmatrix_3 (double **m)
void	mne_transpose_square_3 (float **mat, int n)
float	mne_dot_vectors_3 (float v1, float v2, int nn)
void	mne_add_scaled_vector_to_3 (float v1, float scale, float v2, int nn)
double **	mne_dmatt_dmat_mult2_3 (double m1, double m2, int d1, int d2, int d3)
float **	mne_mat_mat_mult_3 (float m1, float m2, int d1, int d2, int d3)
void	mne_mat_vec_mult2_3 (float *m, float v, float *result, int d1, int d2)
QString	mne_name_list_to_string_3 (const QStringList &list)
QString	mne_channel_names_to_string_3 (const QList< FiffChInfo > &chs, int nch)
void	mne_string_to_name_list_3 (const QString &s, QStringList &listp, int &nlistp)
FiffSparseMatrix *	mne_convert_to_sparse_3 (float **dense, int nrow, int ncol, int stor_type, float small)
int	mne_is_diag_cov_3 (MNECovMatrix *c)
void	mne_scale_vector_3 (double scale, float *v, int nn)
Eigen::MatrixXf	toFloatEigenMatrix_3 (float **mat, const int m, const int n)
void	fromFloatEigenMatrix_3 (const Eigen::MatrixXf &from_mat, float **&to_mat, const int m, const int n)
void	fromFloatEigenMatrix_3 (const Eigen::MatrixXf &from_mat, float **&to_mat)
void	fromFloatEigenVector_3 (const Eigen::VectorXf &from_vec, float *to_vec, const int n)
float **	mne_lu_invert_3 (float **mat, int dim)
void	mne_free_cmatrix_3 (float **m)
int	mne_svd_3 (float *mat, int m, int n, float sing, float uu, float vv)
void	mne_free_cov_3 (MNECovMatrix *c)
int	mne_get_values_from_data_3 (float time, float integ, float *data, int nsamp, int nch, float tmin, float sfreq, int use_abs, float value)
int	mne_decompose_eigen_3 (double mat, double lambda, Eigen::Matrix< float, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor > &vectors, int dim)
int	mne_add_inv_cov_3 (MNECovMatrix *c)
int	mne_classify_channels_cov (MNECovMatrix *cov, const QList< FiffChInfo > &chs, int nchan)
int	mne_decompose_eigen_cov_3 (MNECovMatrix *c)
int	mne_whiten_data (float data, float whitened_data, int np, int nchan, MNECovMatrix *C)
int	mne_whiten_one_data (float data, float whitened_data, int nchan, MNECovMatrix *C)
void	mne_regularize_cov (MNECovMatrix c, float regs)

int	mne_simplex_minimize (float *p, float y, int ndim, float ftol, float(func)(float x, int npar, void user_data), void user_data, int max_eval, int neval, int report, int(report_func)(int loop, float *fitpar, int npar, double fval))
int	fit_sphere_to_points (const MNESurfaceOrVolume::PointsT &rr, int np, float simplex_size, float r0, float R)
void	mne_proj_op_report_data_3 (QTextStream &out, const char tag, MNEProjOp op, int list_data, char **exclude, int nexclude)
void	mne_proj_op_report_3 (QTextStream &out, const char tag, MNEProjOp op)
int	mne_pick_from_named_vector_3 (MNENamedVector vec, const QStringList &names, int nnames, int require_all, float res)
MNEProjOp *	mne_read_proj_op_from_node_3 (FiffStream::SPtr &stream, const FiffDirNode::SPtr &start)
MNEProjOp *	mne_read_proj_op_3 (const QString &name)
int	mne_proj_op_chs_3 (MNEProjOp *op, const QStringList &list, int nlist)
int	mne_proj_op_make_proj_bad (MNEProjOp op, char *bad, int nbad)
int	mne_proj_op_make_proj (MNEProjOp *op)
int	mne_read_meg_comp_eeg_ch_info_3 (const QString &name, QList< FiffChInfo > &megp, int nmegp, QList< FiffChInfo > &meg_compp, int nmeg_compp, QList< FiffChInfo > &eegp, int neegp, FiffCoordTrans meg_head_t, fiffId *idp)
int	is_selected_in_data (mshMegEegData d, const QString &ch_name)
int	mne_read_bad_channels_3 (const QString &name, QStringList &listp, int &nlistp)
int	mne_read_bad_channel_list_from_node_3 (FiffStream::SPtr &stream, const FiffDirNode::SPtr &pNode, QStringList &listp, int &nlistp)
int	mne_read_bad_channel_list_3 (const QString &name, QStringList &listp, int &nlistp)
std::unique_ptr< MNECovMatrix >	mne_read_cov (const QString &name, int kind)
const char *	mne_coord_frame_name_3 (int frame)
void	mne_merge_channels (const QList< FiffChInfo > &chs1, int nch1, const QList< FiffChInfo > &chs2, int nch2, QList< FiffChInfo > &resp, int *nresp)
int	read_meg_eeg_ch_info (const QString &name, int do_meg, int do_eeg, const QStringList &bads, int nbad, QList< FiffChInfo > &chsp, int nmegp, int neegp)
void	mne_revert_to_diag_cov (MNECovMatrix *c)
std::unique_ptr< MNECovMatrix >	mne_pick_chs_cov_omit (MNECovMatrix *c, const QStringList &new_names, int ncov, int omit_meg_eeg, const QList< FiffChInfo > &chs)
int	mne_proj_op_proj_dvector (MNEProjOp op, double vec, int nch, int do_complement)
int	mne_name_list_match (const QStringList &list1, int nlist1, const QStringList &list2, int nlist2)
void	mne_transpose_dsquare (double **mat, int n)
int	mne_proj_op_apply_cov (MNEProjOp op, MNECovMatrix c)
void	print_fields (float rd, float Q, float time, float integ, DipoleFitData fit, MNEMeasData data)
DipoleForward *	dipole_forward (DipoleFitData d, float rd, int ndip, DipoleForward old)
int	simplex_minimize (float *p, float y, int ndim, float ftol, float stol, float(func)(float x, int npar, void user_data), void user_data, int max_eval, int neval, int report, int(report_func)(int loop, float *fitpar, int npar, double fval_lo, double fval_hi, double par_diff))

Macro Definition Documentation

◆ _USE_MATH_DEFINES

#define _USE_MATH_DEFINES

Definition at line 26 of file dipole_fit_data.cpp.

◆ ALLOC_CMATRIX_3

#define ALLOC_CMATRIX_3	(		x,
			y )

Value:

mne_cmatrix_3((x),(y))

mne_cmatrix_3

float ** mne_cmatrix_3(int nr, int nc)

Definition dipole_fit_data.cpp:104

Definition at line 83 of file dipole_fit_data.cpp.

◆ ALLOC_DCMATRIX_3

#define ALLOC_DCMATRIX_3	(		x,
			y )

Value:

mne_dmatrix_3((x),(y))

mne_dmatrix_3

double ** mne_dmatrix_3(int nr, int nc)

Definition dipole_fit_data.cpp:121

Definition at line 82 of file dipole_fit_data.cpp.

◆ ALLOC_FLOAT_3

#define ALLOC_FLOAT_3 ( x )

Value:

MALLOC_3(x,float)

MALLOC_3

#define MALLOC_3(x, t)

Definition dipole_fit_data.cpp:73

Definition at line 80 of file dipole_fit_data.cpp.

◆ ALPHA [1/2]

#define ALPHA 1.0

Definition at line 1296 of file dipole_fit_data.cpp.

◆ ALPHA [2/2]

#define ALPHA 1.0

Definition at line 1296 of file dipole_fit_data.cpp.

◆ BETA [1/2]

#define BETA 0.5

Definition at line 1297 of file dipole_fit_data.cpp.

◆ BETA [2/2]

#define BETA 0.5

Definition at line 1297 of file dipole_fit_data.cpp.

◆ CROSS_PRODUCT_3

#define CROSS_PRODUCT_3	(	x,
		y,
		xy )

Value:

{\
(xy)[X_3] =   (x)[Y_3]*(y)[Z_3]-(y)[Y_3]*(x)[Z_3];\
(xy)[Y_3] = -((x)[X_3]*(y)[Z_3]-(y)[X_3]*(x)[Z_3]);\
(xy)[Z_3] =   (x)[X_3]*(y)[Y_3]-(y)[X_3]*(x)[Y_3];\
}

Definition at line 169 of file dipole_fit_data.cpp.

◆ EPS_3

#define EPS_3 0.05

Definition at line 583 of file dipole_fit_data.cpp.

◆ FAIL

#define FAIL -1

Definition at line 62 of file dipole_fit_data.cpp.

◆ FALSE

#define FALSE 0

Definition at line 58 of file dipole_fit_data.cpp.

◆ FIFFV_COIL_CTF_OFFDIAG_REF_GRAD

#define FIFFV_COIL_CTF_OFFDIAG_REF_GRAD 5004

Definition at line 50 of file dipole_fit_data.cpp.

◆ FREE_3

#define FREE_3 ( x )

Value:

if ((char *)(x) != NULL) free((char *)(x))

Definition at line 75 of file dipole_fit_data.cpp.

◆ FREE_CMATRIX_3

#define FREE_CMATRIX_3 ( m )

Value:

mne_free_cmatrix_3((m))

mne_free_cmatrix_3

void mne_free_cmatrix_3(float **m)

Definition dipole_fit_data.cpp:520

Definition at line 84 of file dipole_fit_data.cpp.

◆ FREE_DCMATRIX_3

#define FREE_DCMATRIX_3 ( m )

Value:

mne_free_dcmatrix_3((m))

mne_free_dcmatrix_3

void mne_free_dcmatrix_3(double **m)

Definition dipole_fit_data.cpp:138

Definition at line 85 of file dipole_fit_data.cpp.

◆ GAMMA [1/2]

#define GAMMA 2.0

Definition at line 1298 of file dipole_fit_data.cpp.

◆ GAMMA [2/2]

#define GAMMA 2.0

Definition at line 1298 of file dipole_fit_data.cpp.

◆ MALLOC_3

#define MALLOC_3	(		x,
			t )

Value:

(t *)malloc((x)*sizeof(t))

Definition at line 73 of file dipole_fit_data.cpp.

◆ MAXLINE

#define MAXLINE 500

Definition at line 2372 of file dipole_fit_data.cpp.

◆ MIN_3

#define MIN_3	(		a,
			b )

Value:

((a) < (b) ? (a) : (b))

Definition at line 177 of file dipole_fit_data.cpp.

◆ MIN_STOL_LOOP

#define MIN_STOL_LOOP 5

Definition at line 4455 of file dipole_fit_data.cpp.

◆ OK

#define OK 0

Definition at line 66 of file dipole_fit_data.cpp.

◆ REALLOC_3

#define REALLOC_3	(	x,
		y,
		t )

Value:

(t *)((x == NULL) ? malloc((y)*sizeof(t)) : realloc((x),(y)*sizeof(t)))

Definition at line 74 of file dipole_fit_data.cpp.

◆ REALLY_REVERT

#define REALLY_REVERT

◆ SMALL_VALUE

#define SMALL_VALUE 1e-4

Definition at line 1918 of file dipole_fit_data.cpp.

◆ TOO_CLOSE

#define TOO_CLOSE 1e-4

Definition at line 2911 of file dipole_fit_data.cpp.

◆ TRUE

#define TRUE 1

Definition at line 54 of file dipole_fit_data.cpp.

◆ USE_LIMIT

#define USE_LIMIT 1e-5

Definition at line 1917 of file dipole_fit_data.cpp.

◆ VEC_COPY_3

#define VEC_COPY_3	(		to,
			from )

Value:

{\
(to)[X_3] = (from)[X_3];\
(to)[Y_3] = (from)[Y_3];\
(to)[Z_3] = (from)[Z_3];\
}

Definition at line 163 of file dipole_fit_data.cpp.

◆ VEC_DIFF_3

#define VEC_DIFF_3	(	from,
		to,
		diff )

Value:

{\
(diff)[X_3] = (to)[X_3] - (from)[X_3];\
(diff)[Y_3] = (to)[Y_3] - (from)[Y_3];\
(diff)[Z_3] = (to)[Z_3] - (from)[Z_3];\
}

Definition at line 157 of file dipole_fit_data.cpp.

◆ VEC_DOT_3

#define VEC_DOT_3	(		x,
			y )

Value:

((x)[X_3]*(y)[X_3] + (x)[Y_3]*(y)[Y_3] + (x)[Z_3]*(y)[Z_3])

Definition at line 150 of file dipole_fit_data.cpp.

◆ VEC_LEN_3

#define VEC_LEN_3 ( x )

Value:

sqrt(VEC_DOT_3(x,x))

VEC_DOT_3

#define VEC_DOT_3(x, y)

Definition dipole_fit_data.cpp:150

Definition at line 151 of file dipole_fit_data.cpp.

◆ X_3

#define X_3 0

Definition at line 69 of file dipole_fit_data.cpp.

◆ Y_3

#define Y_3 1

Definition at line 70 of file dipole_fit_data.cpp.

◆ Z_3

#define Z_3 2

Definition at line 71 of file dipole_fit_data.cpp.

Function Documentation

◆ dipole_forward()

DipoleForward * dipole_forward	(	DipoleFitData *	d,
		float **	rd,
		int	ndip,
		DipoleForward *	old )

Definition at line 4175 of file dipole_fit_data.cpp.

◆ fit_sphere_to_points()

int fit_sphere_to_points	(	const MNESurfaceOrVolume::PointsT &	rr,
		int	np,
		float	simplex_size,
		float *	r0,
		float *	R )

Definition at line 1552 of file dipole_fit_data.cpp.

◆ fromFloatEigenMatrix_3() [1/2]

void fromFloatEigenMatrix_3	(	const Eigen::MatrixXf &	from_mat,
		float **&	to_mat )

Definition at line 497 of file dipole_fit_data.cpp.

◆ fromFloatEigenMatrix_3() [2/2]

void fromFloatEigenMatrix_3	(	const Eigen::MatrixXf &	from_mat,
		float **&	to_mat,
		const int	m,
		const int	n )

Definition at line 490 of file dipole_fit_data.cpp.

◆ fromFloatEigenVector_3()

void fromFloatEigenVector_3	(	const Eigen::VectorXf &	from_vec,
		float *	to_vec,
		const int	n )

Definition at line 502 of file dipole_fit_data.cpp.

◆ is_selected_in_data()

int is_selected_in_data	(	mshMegEegData	d,
		const QString &	ch_name )

Definition at line 2333 of file dipole_fit_data.cpp.

◆ mne_add_inv_cov_3()

int mne_add_inv_cov_3 ( MNECovMatrix * c )

Definition at line 807 of file dipole_fit_data.cpp.

◆ mne_add_scaled_vector_to_3()

void mne_add_scaled_vector_to_3	(	float *	v1,
		float	scale,
		float *	v2,
		int	nn )

Definition at line 215 of file dipole_fit_data.cpp.

◆ mne_channel_names_to_string_3()

QString mne_channel_names_to_string_3	(	const QList< FiffChInfo > &	chs,
		int	nch )

Definition at line 325 of file dipole_fit_data.cpp.

◆ mne_classify_channels_cov()

int mne_classify_channels_cov	(	MNECovMatrix *	cov,
		const QList< FiffChInfo > &	chs,
		int	nchan )

Definition at line 969 of file dipole_fit_data.cpp.

◆ mne_cmatrix_3()

float ** mne_cmatrix_3	(	int	nr,
		int	nc )

Definition at line 104 of file dipole_fit_data.cpp.

◆ mne_convert_to_sparse_3()

FiffSparseMatrix * mne_convert_to_sparse_3	(	float **	dense,
		int	nrow,
		int	ncol,
		int	stor_type,
		float	small )

Definition at line 361 of file dipole_fit_data.cpp.

◆ mne_coord_frame_name_3()

const char * mne_coord_frame_name_3 ( int frame )

Definition at line 2684 of file dipole_fit_data.cpp.

◆ mne_decompose_eigen_3()

int mne_decompose_eigen_3	(	double *	mat,
		double *	lambda,
		Eigen::Matrix< float, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor > &	vectors,
		int	dim )

Definition at line 714 of file dipole_fit_data.cpp.

◆ mne_decompose_eigen_cov_3()

int mne_decompose_eigen_cov_3 ( MNECovMatrix * c )

Definition at line 1083 of file dipole_fit_data.cpp.

◆ mne_dmatrix_3()

double ** mne_dmatrix_3	(	int	nr,
		int	nc )

Definition at line 121 of file dipole_fit_data.cpp.

◆ mne_dmatt_dmat_mult2_3()

double ** mne_dmatt_dmat_mult2_3	(	double **	m1,
		double **	m2,
		int	d1,
		int	d2,
		int	d3 )

Definition at line 230 of file dipole_fit_data.cpp.

◆ mne_dot_vectors_3()

float mne_dot_vectors_3	(	float *	v1,
		float *	v2,
		int	nn )

Definition at line 196 of file dipole_fit_data.cpp.

◆ mne_free_cmatrix_3()

void mne_free_cmatrix_3 ( float ** m )

Definition at line 520 of file dipole_fit_data.cpp.

◆ mne_free_cov_3()

void mne_free_cov_3 ( MNECovMatrix * c )

Definition at line 572 of file dipole_fit_data.cpp.

◆ mne_free_dcmatrix_3()

void mne_free_dcmatrix_3 ( double ** m )

Definition at line 138 of file dipole_fit_data.cpp.

◆ mne_get_values_from_data_3()

int mne_get_values_from_data_3	(	float	time,
		float	integ,
		float **	data,
		int	nsamp,
		int	nch,
		float	tmin,
		float	sfreq,
		int	use_abs,
		float *	value )

Definition at line 585 of file dipole_fit_data.cpp.

◆ mne_is_diag_cov_3()

int mne_is_diag_cov_3 ( MNECovMatrix * c )

Definition at line 458 of file dipole_fit_data.cpp.

◆ mne_lu_invert_3()

float ** mne_lu_invert_3	(	float **	mat,
		int	dim )

Definition at line 508 of file dipole_fit_data.cpp.

◆ mne_mat_mat_mult_3()

float ** mne_mat_mat_mult_3	(	float **	m1,
		float **	m2,
		int	d1,
		int	d2,
		int	d3 )

Definition at line 261 of file dipole_fit_data.cpp.

◆ mne_mat_vec_mult2_3()

void mne_mat_vec_mult2_3	(	float **	m,
		float *	v,
		float *	result,
		int	d1,
		int	d2 )

Definition at line 291 of file dipole_fit_data.cpp.

◆ mne_merge_channels()

void mne_merge_channels	(	const QList< FiffChInfo > &	chs1,
		int	nch1,
		const QList< FiffChInfo > &	chs2,
		int	nch2,
		QList< FiffChInfo > &	resp,
		int *	nresp )

Definition at line 2715 of file dipole_fit_data.cpp.

◆ mne_name_list_match()

int mne_name_list_match	(	const QStringList &	list1,
		int	nlist1,
		const QStringList &	list2,
		int	nlist2 )

Definition at line 3187 of file dipole_fit_data.cpp.

◆ mne_name_list_to_string_3()

QString mne_name_list_to_string_3 ( const QStringList & list )

Definition at line 307 of file dipole_fit_data.cpp.

◆ mne_pick_chs_cov_omit()

std::unique_ptr< MNECovMatrix > mne_pick_chs_cov_omit	(	MNECovMatrix *	c,
		const QStringList &	new_names,
		int	ncov,
		int	omit_meg_eeg,
		const QList< FiffChInfo > &	chs )

Definition at line 3040 of file dipole_fit_data.cpp.

◆ mne_pick_from_named_vector_3()

int mne_pick_from_named_vector_3	(	MNENamedVector *	vec,
		const QStringList &	names,
		int	nnames,
		int	require_all,
		float *	res )

Definition at line 1688 of file dipole_fit_data.cpp.

◆ mne_proj_op_apply_cov()

int mne_proj_op_apply_cov	(	MNEProjOp *	op,
		MNECovMatrix *	c )

Definition at line 3223 of file dipole_fit_data.cpp.

◆ mne_proj_op_chs_3()

int mne_proj_op_chs_3	(	MNEProjOp *	op,
		const QStringList &	list,
		int	nlist )

Definition at line 1891 of file dipole_fit_data.cpp.

◆ mne_proj_op_make_proj()

int mne_proj_op_make_proj ( MNEProjOp * op )

Definition at line 2156 of file dipole_fit_data.cpp.

◆ mne_proj_op_make_proj_bad()

int mne_proj_op_make_proj_bad	(	MNEProjOp *	op,
		char **	bad,
		int	nbad )

Definition at line 1920 of file dipole_fit_data.cpp.

◆ mne_proj_op_proj_dvector()

int mne_proj_op_proj_dvector	(	MNEProjOp *	op,
		double *	vec,
		int	nch,
		int	do_complement )

Definition at line 3146 of file dipole_fit_data.cpp.

◆ mne_proj_op_report_3()

void mne_proj_op_report_3	(	QTextStream &	out,
		const char *	tag,
		MNEProjOp *	op )

Definition at line 1681 of file dipole_fit_data.cpp.

◆ mne_proj_op_report_data_3()

void mne_proj_op_report_data_3	(	QTextStream &	out,
		const char *	tag,
		MNEProjOp *	op,
		int	list_data,
		char **	exclude,
		int	nexclude )

Definition at line 1626 of file dipole_fit_data.cpp.

◆ mne_read_bad_channel_list_3()

int mne_read_bad_channel_list_3	(	const QString &	name,
		QStringList &	listp,
		int &	nlistp )

Definition at line 2446 of file dipole_fit_data.cpp.

◆ mne_read_bad_channel_list_from_node_3()

int mne_read_bad_channel_list_from_node_3	(	FiffStream::SPtr &	stream,
		const FiffDirNode::SPtr &	pNode,
		QStringList &	listp,
		int &	nlistp )

Definition at line 2414 of file dipole_fit_data.cpp.

◆ mne_read_bad_channels_3()

int mne_read_bad_channels_3	(	const QString &	name,
		QStringList &	listp,
		int &	nlistp )

Definition at line 2374 of file dipole_fit_data.cpp.

◆ mne_read_cov()

std::unique_ptr< MNECovMatrix > mne_read_cov	(	const QString &	name,
		int	kind )

Definition at line 2464 of file dipole_fit_data.cpp.

◆ mne_read_meg_comp_eeg_ch_info_3()

int mne_read_meg_comp_eeg_ch_info_3	(	const QString &	name,
		QList< FiffChInfo > &	megp,
		int *	nmegp,
		QList< FiffChInfo > &	meg_compp,
		int *	nmeg_compp,
		QList< FiffChInfo > &	eegp,
		int *	neegp,
		FiffCoordTrans *	meg_head_t,
		fiffId *	idp )

Definition at line 2166 of file dipole_fit_data.cpp.

◆ mne_read_proj_op_3()

MNEProjOp * mne_read_proj_op_3 ( const QString & name )

Definition at line 1872 of file dipole_fit_data.cpp.

◆ mne_read_proj_op_from_node_3()

MNEProjOp * mne_read_proj_op_from_node_3	(	FiffStream::SPtr &	stream,
		const FiffDirNode::SPtr &	start )

Definition at line 1723 of file dipole_fit_data.cpp.

◆ mne_regularize_cov()

void mne_regularize_cov	(	MNECovMatrix *	c,
		float *	regs )

Definition at line 1220 of file dipole_fit_data.cpp.

◆ mne_revert_to_diag_cov()

void mne_revert_to_diag_cov ( MNECovMatrix * c )

Definition at line 3011 of file dipole_fit_data.cpp.

◆ mne_scale_vector_3()

void mne_scale_vector_3	(	double	scale,
		float *	v,
		int	nn )

Definition at line 464 of file dipole_fit_data.cpp.

◆ mne_simplex_minimize()

int mne_simplex_minimize	(	float **	p,
		float *	y,
		int	ndim,
		float	ftol,
		float(*	func )(float x, int npar, void user_data),
		void *	user_data,
		int	max_eval,
		int *	neval,
		int	report,
		int(*	report_func )(int loop, float *fitpar, int npar, double fval) )

Definition at line 1332 of file dipole_fit_data.cpp.

◆ mne_string_to_name_list_3()

void mne_string_to_name_list_3	(	const QString &	s,
		QStringList &	listp,
		int &	nlistp )

Definition at line 343 of file dipole_fit_data.cpp.

◆ mne_svd_3()

int mne_svd_3	(	float **	mat,
		int	m,
		int	n,
		float *	sing,
		float **	uu,
		float **	vv )

Definition at line 528 of file dipole_fit_data.cpp.

◆ mne_transpose_dsquare()

void mne_transpose_dsquare	(	double **	mat,
		int	n )

Definition at line 3206 of file dipole_fit_data.cpp.

◆ mne_transpose_square_3()

void mne_transpose_square_3	(	float **	mat,
		int	n )

Definition at line 179 of file dipole_fit_data.cpp.

◆ mne_whiten_data()

int mne_whiten_data	(	float **	data,
		float **	whitened_data,
		int	np,
		int	nchan,
		MNECovMatrix *	C )

Definition at line 1091 of file dipole_fit_data.cpp.

◆ mne_whiten_one_data()

int mne_whiten_one_data	(	float *	data,
		float *	whitened_data,
		int	nchan,
		MNECovMatrix *	C )

Definition at line 1137 of file dipole_fit_data.cpp.

◆ print_fields()

void print_fields	(	float *	rd,
		float *	Q,
		float	time,
		float	integ,
		DipoleFitData *	fit,
		MNEMeasData *	data )

Definition at line 4131 of file dipole_fit_data.cpp.

◆ read_meg_eeg_ch_info()

int read_meg_eeg_ch_info	(	const QString &	name,
		int	do_meg,
		int	do_eeg,
		const QStringList &	bads,
		int	nbad,
		QList< FiffChInfo > &	chsp,
		int *	nmegp,
		int *	neegp )

Definition at line 2945 of file dipole_fit_data.cpp.

◆ simplex_minimize()

int simplex_minimize	(	float **	p,
		float *	y,
		int	ndim,
		float	ftol,
		float	stol,
		float(*	func )(float x, int npar, void user_data),
		void *	user_data,
		int	max_eval,
		int *	neval,
		int	report,
		int(*	report_func )(int loop, float *fitpar, int npar, double fval_lo, double fval_hi, double par_diff) )

Definition at line 4489 of file dipole_fit_data.cpp.

◆ toFloatEigenMatrix_3()

Eigen::MatrixXf toFloatEigenMatrix_3	(	float **	mat,
		const int	m,
		const int	n )

Definition at line 479 of file dipole_fit_data.cpp.

Classes

Namespaces

Macros

Typedefs

Functions

Macro Definition Documentation

◆ _USE_MATH_DEFINES

◆ ALLOC_CMATRIX_3

◆ ALLOC_DCMATRIX_3

◆ ALLOC_FLOAT_3

◆ ALPHA [1/2]

◆ ALPHA [2/2]

◆ BETA [1/2]

◆ BETA [2/2]

◆ CROSS_PRODUCT_3

◆ EPS_3

◆ FAIL

◆ FALSE

◆ FIFFV_COIL_CTF_OFFDIAG_REF_GRAD

◆ FREE_3

◆ FREE_CMATRIX_3

◆ FREE_DCMATRIX_3

◆ GAMMA [1/2]

◆ GAMMA [2/2]

◆ MALLOC_3

◆ MAXLINE

◆ MIN_3

◆ MIN_STOL_LOOP

◆ OK

◆ REALLOC_3

◆ REALLY_REVERT

◆ SMALL_VALUE

◆ TOO_CLOSE

◆ TRUE

◆ USE_LIMIT

◆ VEC_COPY_3

◆ VEC_DIFF_3

◆ VEC_DOT_3

◆ VEC_LEN_3

◆ X_3

◆ Y_3

◆ Z_3

Function Documentation

◆ dipole_forward()

◆ fit_sphere_to_points()

◆ fromFloatEigenMatrix_3() [1/2]

◆ fromFloatEigenMatrix_3() [2/2]

◆ fromFloatEigenVector_3()

◆ is_selected_in_data()

◆ mne_add_inv_cov_3()

◆ mne_add_scaled_vector_to_3()

◆ mne_channel_names_to_string_3()

◆ mne_classify_channels_cov()

◆ mne_cmatrix_3()

◆ mne_convert_to_sparse_3()

◆ mne_coord_frame_name_3()

◆ mne_decompose_eigen_3()

◆ mne_decompose_eigen_cov_3()

◆ mne_dmatrix_3()

◆ mne_dmatt_dmat_mult2_3()

◆ mne_dot_vectors_3()

◆ mne_free_cmatrix_3()

◆ mne_free_cov_3()

◆ mne_free_dcmatrix_3()

◆ mne_get_values_from_data_3()

◆ mne_is_diag_cov_3()

◆ mne_lu_invert_3()

◆ mne_mat_mat_mult_3()

◆ mne_mat_vec_mult2_3()

◆ mne_merge_channels()

◆ mne_name_list_match()

◆ mne_name_list_to_string_3()

◆ mne_pick_chs_cov_omit()

◆ mne_pick_from_named_vector_3()

◆ mne_proj_op_apply_cov()

◆ mne_proj_op_chs_3()

◆ mne_proj_op_make_proj()

◆ mne_proj_op_make_proj_bad()

◆ mne_proj_op_proj_dvector()

◆ mne_proj_op_report_3()