#include <fiff/fiff_types.h>
#include <fwd/fwd_coil_set.h>
#include "../c/mne_meas_data.h"
#include <mne/mne_surface_or_volume.h>
#include <mne/mne_cov_matrix.h>
#include <fiff/fiff_digitizer_data.h>
#include <fiff/fiff_coord_trans_set.h>
#include <mne/mne_msh_color_scale_def.h>
#include <mne/mne_surface_patch.h>
#include <mne/mne_layout.h>
#include <memory>

Include dependency graph for analyze_types.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
struct	INVERSELIB::mshScales
	Display scale settings for MEG/EEG amplitude, time range, and baseline parameters. More...
struct	INVERSELIB::fieldMappingPref
	Preferences for MEG/EEG field mapping including interpolation grades, smoothing, and sphere model origins. More...
struct	INVERSELIB::mnePref
	MNE computation preferences including regularization, estimate type, color scales, and display options. More...
struct	INVERSELIB::mshLabel
	Cortical label storing vertex indices, hemisphere assignment, and display color. More...
struct	INVERSELIB::mshLabelSet
	Collection of cortical labels for region-of-interest analysis. More...
struct	INVERSELIB::mneOverlay
	Overlay data for cortical or scalp surface display, including color scale, contour, and opacity settings. More...
struct	INVERSELIB::overlayPref
	Overlay display preferences storing color scale definitions, smoothing, opacity, and contour settings per overlay type. More...
struct	INVERSELIB::fieldMappingData
	Sphere-model field mapping data holding coils, dot products, and the interpolation matrix for MEG or EEG. More...
struct	INVERSELIB::contourMap
	Contour map values computed on a surface for MEG or EEG field visualization. More...
struct	INVERSELIB::hpiResultData
	HPI measurement result storing coil positions, goodness-of-fit values, and head-to-device transformation. More...
struct	INVERSELIB::timecourseData
	Single saved timecourse extracted from source data or overlay, with label, vertex selection, and waveform. More...
struct	INVERSELIB::timecourseDataSet
	Collection of saved timecourses for batch display and analysis. More...
struct	INVERSELIB::dataSetData
	Persistent state across data set changes, holding sample index, picked time, scale settings, and MNE preferences. More...
struct	INVERSELIB::mshMegEegData
	Combined MEG/EEG measurement data with inverse operator, field mapping, dipole fitting, and display state. More...
struct	INVERSELIB::contHpiData
	Single continuous HPI data point with quaternion orientation, translation, and goodness-of-fit. More...
struct	INVERSELIB::contHpiDataSet
	Time series of continuous HPI measurements with coil movement and angular velocity tracking. More...

Namespaces
namespace	INVERSELIB
	Inverse source estimation (MNE, dSPM, sLORETA, dipole fitting).

Macros
#define	SURF_UNKNOWN -1
#define	SURF_LEFT_HEMI FIFFV_MNE_SURF_LEFT_HEMI
#define	SURF_RIGHT_HEMI FIFFV_MNE_SURF_RIGHT_HEMI
#define	SURF_BOTH_HEMIS 103
#define	SURF_LEFT_MORPH_HEMI (1 << 16 \| FIFFV_MNE_SURF_LEFT_HEMI)
#define	SURF_RIGHT_MORPH_HEMI (1 << 16 \| FIFFV_MNE_SURF_RIGHT_HEMI)
#define	LABEL_TASK_NONE -1
#define	LABEL_TASK_MAX 1
#define	LABEL_TASK_AVE 2
#define	LABEL_TASK_L2 3
#define	LABEL_TASK_L1 4
#define	LABEL_TASK_TIME_L2 5
#define	SHOW_CURVATURE_NONE 0
#define	SHOW_CURVATURE_OVERLAY 1
#define	SHOW_OVERLAY_NONE 0
#define	SHOW_OVERLAY_HEAT 1
#define	SHOW_OVERLAY_NEGPOS 2
#define	ESTIMATE_NONE 0
#define	ESTIMATE_MNE 1
#define	ESTIMATE_dSPM 2
#define	ESTIMATE_sLORETA 3
#define	ESTIMATE_fMRI 4
#define	ESTIMATE_NOISE 5
#define	ESTIMATE_OTHER 6
#define	ESTIMATE_PSF 7
#define	FIELD_MAP_UNKNOWN 0
#define	FIELD_MAP_MEG 8
#define	GRAD_MAP_MEG 9
#define	FIELD_MAP_EEG 10
#define	OVERLAY_MAP 11
#define	MAIN_SURFACES 0
#define	ALT_SURFACES 1
#define	OVERLAY_CORTEX 1
#define	OVERLAY_SCALP 2
#define	TIMECOURSE_SOURCE_UNKNOWN -1
#define	TIMECOURSE_SOURCE_DATA 1
#define	TIMECOURSE_SOURCE_OVERLAY 2
#define	MNEV_REG_NOISE 1
#define	MNEV_REG_PEARSON 2
#define	MNEV_REG_GCV 3
#define	NOISE_NORMALIZED(e)

Typedefs
typedef struct INVERSELIB::mshScales	INVERSELIB::mshScalesRec
typedef struct INVERSELIB::fieldMappingPref	INVERSELIB::fieldMappingPrefRec
typedef struct INVERSELIB::mnePref	INVERSELIB::mnePrefRec
typedef struct INVERSELIB::mshLabel	INVERSELIB::mshLabelRec
typedef struct INVERSELIB::mshLabelSet	INVERSELIB::mshLabelSetRec
typedef struct INVERSELIB::mneOverlay	INVERSELIB::mneOverlayRec
typedef struct INVERSELIB::overlayPref	INVERSELIB::overlayPrefRec
typedef struct INVERSELIB::fieldMappingData	INVERSELIB::fieldMappingDataRec
typedef struct INVERSELIB::contourMap	INVERSELIB::contourMapRec
typedef struct INVERSELIB::hpiResultData	INVERSELIB::hpiResultDataRec
typedef struct INVERSELIB::timecourseData	INVERSELIB::timecourseDataRec
typedef struct INVERSELIB::timecourseDataSet	INVERSELIB::timecourseDataSetRec
typedef struct INVERSELIB::dataSetData	INVERSELIB::dataSetDataRec
typedef struct INVERSELIB::mshMegEegData	INVERSELIB::mshMegEegDataRec
typedef void(*	INVERSELIB::colorEditorDoneFunc) (float color, void user)
typedef struct INVERSELIB::contHpiData	INVERSELIB::contHpiDataRec
typedef struct INVERSELIB::contHpiDataSet	INVERSELIB::contHpiDataSetRec

Macro Definition Documentation

◆ ALT_SURFACES

#define ALT_SURFACES 1

Definition at line 44 of file analyze_types.h.

◆ ESTIMATE_dSPM

#define ESTIMATE_dSPM 2

Definition at line 30 of file analyze_types.h.

◆ ESTIMATE_fMRI

#define ESTIMATE_fMRI 4

Definition at line 32 of file analyze_types.h.

◆ ESTIMATE_MNE

#define ESTIMATE_MNE 1

Definition at line 29 of file analyze_types.h.

◆ ESTIMATE_NOISE

#define ESTIMATE_NOISE 5

Definition at line 33 of file analyze_types.h.

◆ ESTIMATE_NONE

#define ESTIMATE_NONE 0

Definition at line 28 of file analyze_types.h.

◆ ESTIMATE_OTHER

#define ESTIMATE_OTHER 6

Definition at line 34 of file analyze_types.h.

◆ ESTIMATE_PSF

#define ESTIMATE_PSF 7

Definition at line 35 of file analyze_types.h.

◆ ESTIMATE_sLORETA

#define ESTIMATE_sLORETA 3

Definition at line 31 of file analyze_types.h.

◆ FIELD_MAP_EEG

#define FIELD_MAP_EEG 10

Definition at line 40 of file analyze_types.h.

◆ FIELD_MAP_MEG

#define FIELD_MAP_MEG 8

Definition at line 38 of file analyze_types.h.

◆ FIELD_MAP_UNKNOWN

#define FIELD_MAP_UNKNOWN 0

Definition at line 37 of file analyze_types.h.

◆ GRAD_MAP_MEG

#define GRAD_MAP_MEG 9

Definition at line 39 of file analyze_types.h.

◆ LABEL_TASK_AVE

#define LABEL_TASK_AVE 2

Definition at line 16 of file analyze_types.h.

◆ LABEL_TASK_L1

#define LABEL_TASK_L1 4

Definition at line 18 of file analyze_types.h.

◆ LABEL_TASK_L2

#define LABEL_TASK_L2 3

Definition at line 17 of file analyze_types.h.

◆ LABEL_TASK_MAX

#define LABEL_TASK_MAX 1

Definition at line 15 of file analyze_types.h.

◆ LABEL_TASK_NONE

#define LABEL_TASK_NONE -1

Definition at line 14 of file analyze_types.h.

◆ LABEL_TASK_TIME_L2

#define LABEL_TASK_TIME_L2 5

Definition at line 19 of file analyze_types.h.

◆ MAIN_SURFACES

#define MAIN_SURFACES 0

Definition at line 43 of file analyze_types.h.

◆ MNEV_REG_GCV

#define MNEV_REG_GCV 3

Definition at line 55 of file analyze_types.h.

◆ MNEV_REG_NOISE

#define MNEV_REG_NOISE 1

Definition at line 53 of file analyze_types.h.

◆ MNEV_REG_PEARSON

#define MNEV_REG_PEARSON 2

Definition at line 54 of file analyze_types.h.

◆ NOISE_NORMALIZED

#define NOISE_NORMALIZED ( e )

Value:

((e) == ESTIMATE_dSPM || (e) == ESTIMATE_sLORETA)

ESTIMATE_sLORETA

#define ESTIMATE_sLORETA

Definition analyze_types.h:31

ESTIMATE_dSPM

#define ESTIMATE_dSPM

Definition analyze_types.h:30

Definition at line 57 of file analyze_types.h.

◆ OVERLAY_CORTEX

#define OVERLAY_CORTEX 1

Definition at line 46 of file analyze_types.h.

◆ OVERLAY_MAP

#define OVERLAY_MAP 11

Definition at line 41 of file analyze_types.h.

◆ OVERLAY_SCALP

#define OVERLAY_SCALP 2

Definition at line 47 of file analyze_types.h.

◆ SHOW_CURVATURE_NONE

#define SHOW_CURVATURE_NONE 0

Definition at line 21 of file analyze_types.h.

◆ SHOW_CURVATURE_OVERLAY

#define SHOW_CURVATURE_OVERLAY 1

Definition at line 22 of file analyze_types.h.

◆ SHOW_OVERLAY_HEAT

#define SHOW_OVERLAY_HEAT 1

Definition at line 25 of file analyze_types.h.

◆ SHOW_OVERLAY_NEGPOS

#define SHOW_OVERLAY_NEGPOS 2

Definition at line 26 of file analyze_types.h.

◆ SHOW_OVERLAY_NONE

#define SHOW_OVERLAY_NONE 0

Definition at line 24 of file analyze_types.h.

◆ SURF_BOTH_HEMIS

#define SURF_BOTH_HEMIS 103

Definition at line 9 of file analyze_types.h.

◆ SURF_LEFT_HEMI

#define SURF_LEFT_HEMI FIFFV_MNE_SURF_LEFT_HEMI

Definition at line 6 of file analyze_types.h.

◆ SURF_LEFT_MORPH_HEMI

#define SURF_LEFT_MORPH_HEMI (1 << 16 | FIFFV_MNE_SURF_LEFT_HEMI)

Definition at line 11 of file analyze_types.h.

◆ SURF_RIGHT_HEMI

#define SURF_RIGHT_HEMI FIFFV_MNE_SURF_RIGHT_HEMI

Definition at line 7 of file analyze_types.h.

◆ SURF_RIGHT_MORPH_HEMI

#define SURF_RIGHT_MORPH_HEMI (1 << 16 | FIFFV_MNE_SURF_RIGHT_HEMI)

Definition at line 12 of file analyze_types.h.

◆ SURF_UNKNOWN

#define SURF_UNKNOWN -1

Definition at line 4 of file analyze_types.h.

◆ TIMECOURSE_SOURCE_DATA

#define TIMECOURSE_SOURCE_DATA 1

Definition at line 50 of file analyze_types.h.

◆ TIMECOURSE_SOURCE_OVERLAY

#define TIMECOURSE_SOURCE_OVERLAY 2

Definition at line 51 of file analyze_types.h.

◆ TIMECOURSE_SOURCE_UNKNOWN

#define TIMECOURSE_SOURCE_UNKNOWN -1

Definition at line 49 of file analyze_types.h.

Classes

Namespaces

Macros

Typedefs