connectivity.cpp

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//=============================================================================================================
 
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "connectivity.h"
 
#include "connectivitysettings.h"
#include "network/network.h"
#include "metrics/correlation.h"
#include "metrics/crosscorrelation.h"
#include "metrics/coherence.h"
#include "metrics/imagcoherence.h"
#include "metrics/phaselagindex.h"
#include "metrics/phaselockingvalue.h"
#include "metrics/weightedphaselagindex.h"
#include "metrics/unbiasedsquaredphaselagindex.h"
#include "metrics/debiasedsquaredweightedphaselagindex.h"
#include "metrics/granger_causality.h"
#include "metrics/directed_transfer_function.h"
#include "metrics/partial_directed_coherence.h"
 
//=============================================================================================================
// QT INCLUDES
//=============================================================================================================
 
#include <QDebug>
#include <QFutureSynchronizer>
#include <QtConcurrent>
 
//=============================================================================================================
// EIGEN INCLUDES
//=============================================================================================================
 
//=============================================================================================================
// USED NAMESPACES
//=============================================================================================================
 
using namespace CONNLIB;
 
//=============================================================================================================
// DEFINE GLOBAL METHODS
//=============================================================================================================
 
//=============================================================================================================
// DEFINE MEMBER METHODS
//=============================================================================================================
 
Connectivity::Connectivity()
{
}
 
//=============================================================================================================
 
QList<Network> Connectivity::calculate(ConnectivitySettings& connectivitySettings)
{
    QStringList lMethods = connectivitySettings.getConnectivityMethods();
    QList<Network> results;
    QElapsedTimer timer;
    timer.start();
 
    if(lMethods.contains("WPLI")) {
        results.append(WeightedPhaseLagIndex::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("USPLI")) {
        results.append(UnbiasedSquaredPhaseLagIndex::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("COR")) {
        results.append(Correlation::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("XCOR")) {
        results.append(CrossCorrelation::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("PLI")) {
        results.append(PhaseLagIndex::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("COH")) {
        results.append(Coherence::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("IMAGCOH")) {
        results.append(ImagCoherence::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("PLV")) {
        results.append(PhaseLockingValue::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("DSWPLI")) {
        results.append(DebiasedSquaredWeightedPhaseLagIndex::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("GC")) {
        results.append(GrangerCausality::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("DTF")) {
        results.append(DirectedTransferFunction::calculate(connectivitySettings));
    }
 
    if(lMethods.contains("PDC")) {
        results.append(PartialDirectedCoherence::calculate(connectivitySettings));
    }
 
    qWarning() << "Total" << timer.elapsed();
    qDebug() << "Connectivity::calculateMultiMethods - Calculated"<< lMethods <<"for" << connectivitySettings.size() << "trials in"<< timer.elapsed() << "msecs.";
 
    return results;
}