MNE-CPP
0.1.9
A Framework for Electrophysiology
src
libraries
fiff
fiff_constants.h
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//=============================================================================================================
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#ifndef FIFF_CONSTANTS_H
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#define FIFF_CONSTANTS_H
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//=============================================================================================================
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// DEFINE NAMESPACE FIFFLIB
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//=============================================================================================================
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namespace
FIFFLIB
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{
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//=============================================================================================================
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// FIFF constants
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//=============================================================================================================
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#define FIFFC_FAIL -1
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#define FIFFC_OK 0
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#define FIFFV_TRUE 1
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#define FIFFV_FALSE 0
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/* Compatibility definitions */
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#define FIFF_FAIL -1
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#define FIFF_OK 0
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#define FIFFC_TAG_INFO_SIZE (sizeof(fiffTagRec) - sizeof(fiff_data_t *))
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#define FIFFC_DATA_OFFSET FIFFC_TAG_INFO_SIZE
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#define FIFFM_TAG_INFO(x) &((x)->kind)
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/*
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* Quaternion channels for head position monitoring
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*/
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#define FIFFV_QUAT_0 700
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#define FIFFV_QUAT_1 701
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#define FIFFV_QUAT_2 702
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#define FIFFV_QUAT_3 703
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#define FIFFV_QUAT_4 704
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#define FIFFV_QUAT_5 705
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#define FIFFV_QUAT_6 706
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#define FIFFV_HPI_G 707
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#define FIFFV_HPI_ERR 708
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#define FIFFV_HPI_MOV 709
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#define FIFFM_QUAT_CH(X) ((X >= FIFFV_QUAT_0) && (X <= FIFFV_HPI_MOV))
/* Check for a quaternion channel */
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#define FIFFV_DIPOLE_WAVE_CH 1000
/* Dipole time curve */
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#define FIFFV_GOODNESS_FIT_CH 1001
/* Goodness of fit */
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#define FIFFM_CHPOS(x) &((x)->chpos)
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/*
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* Units of measurement
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*/
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#define FIFF_UNIT_NONE -1
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/*
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* SI base units
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*/
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#define FIFF_UNIT_M 1
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#define FIFF_UNIT_KG 2
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#define FIFF_UNIT_SEC 3
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#define FIFF_UNIT_A 4
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#define FIFF_UNIT_K 5
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#define FIFF_UNIT_MOL 6
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/*
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* SI Supplementary units
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*/
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#define FIFF_UNIT_RAD 7
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#define FIFF_UNIT_SR 8
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/*
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* SI base candela
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*/
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#define FIFF_UNIT_CD 9
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/*
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* SI derived units
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*/
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#define FIFF_UNIT_HZ 101
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#define FIFF_UNIT_N 102
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#define FIFF_UNIT_PA 103
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#define FIFF_UNIT_J 104
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#define FIFF_UNIT_W 105
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#define FIFF_UNIT_C 106
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#define FIFF_UNIT_V 107
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#define FIFF_UNIT_F 108
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#define FIFF_UNIT_OHM 109
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#define FIFF_UNIT_MHO 110
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#define FIFF_UNIT_WB 111
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#define FIFF_UNIT_T 112
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#define FIFF_UNIT_H 113
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#define FIFF_UNIT_CEL 114
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#define FIFF_UNIT_LM 115
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#define FIFF_UNIT_LX 116
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/*
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* Others we need
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*/
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#define FIFF_UNIT_T_M 201
/* T/m */
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#define FIFF_UNIT_AM 202
/* Am */
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#define FIFF_UNIT_AM_M2 203
/* Am/m^2 */
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#define FIFF_UNIT_AM_M3 204
/* Am/m^3 */
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/*
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* Multipliers
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*/
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#define FIFF_UNITM_E 18
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#define FIFF_UNITM_PET 15
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#define FIFF_UNITM_T 12
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#define FIFF_UNITM_MEG 6
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#define FIFF_UNITM_K 3
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#define FIFF_UNITM_H 2
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#define FIFF_UNITM_DA 1
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#define FIFF_UNITM_NONE 0
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#define FIFF_UNITM_D -1
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#define FIFF_UNITM_C -2
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#define FIFF_UNITM_M -3
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#define FIFF_UNITM_MU -6
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#define FIFF_UNITM_N -9
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#define FIFF_UNITM_P -12
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#define FIFF_UNITM_F -15
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#define FIFF_UNITM_A -18
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/*
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* Coil types
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*/
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#define FIFFV_COIL_NONE 0
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#define FIFFV_COIL_EEG 1
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#define FIFFV_COIL_NM_122 2
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#define FIFFV_COIL_NM_24 3
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#define FIFFV_COIL_NM_MCG_AXIAL 4
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#define FIFFV_COIL_EEG_BIPOLAR 5
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#define FIFFV_COIL_DIPOLE 200
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#define FIFFV_COIL_MCG_42 1000
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#define FIFFV_COIL_POINT_MAGNETOMETER 2000
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#define FIFFV_COIL_AXIAL_GRAD_5CM 2001
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#define FIFFV_COIL_VV_PLANAR_W 3011
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#define FIFFV_COIL_VV_PLANAR_T1 3012
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#define FIFFV_COIL_VV_PLANAR_T2 3013
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#define FIFFV_COIL_VV_PLANAR_T3 3014
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#define FIFFV_COIL_VV_MAG_W 3021
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#define FIFFV_COIL_VV_MAG_T1 3022
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#define FIFFV_COIL_VV_MAG_T2 3023
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#define FIFFV_COIL_VV_MAG_T3 3024
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#define FIFFV_COIL_MAGNES_MAG 4001
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#define FIFFV_COIL_MAGNES_GRAD 4002
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#define FIFFV_COIL_CTF_GRAD 5001
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#define FIFFV_COIL_CTF_REF_MAG 5002
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#define FIFFV_COIL_CTF_REF_GRAD 5003
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#define FIFFV_COIL_CTF_REF_GOFF 5004
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#define FIFFV_COIL_KIT_GRAD 6001
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#define FIFFV_COIL_KIT_REF_GRAD 6002
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#define FIFFV_COIL_BABY_GRAD 7001
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#define FIFFV_COIL_BABY_MAG 7002
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#define FIFFV_COIL_BABY_REF_MAG 7003
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#define FIFFV_COIL_BABY_REF_MAG2 7004
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#define FIFFV_COIL_ARTEMIS123_GRAD 7501
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#define FIFFV_COIL_ARTEMIS123_REF_MAG 7502
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#define FIFFV_COIL_ARTEMIS123_REF_GRAD 7503
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#define FIFFV_COIL_QUSPIN_ZFOPM_MAG 8001
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#define FIFFV_COIL_KRISS_GRAD 9001
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#define FIFFV_COIL_COMPUMEDICS_ADULT_GRAD 9101
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#define FIFFV_COIL_COMPUMEDICS_PEDIATRIC_GRAD 9102
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#define FIFFM_IS_VV_COIL(c) ((c)/1000 == 3)
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/*
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* These are the cardinal points for MCG data
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* Left and right are supposed to be located below the sternum point
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*/
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#define FIFFV_POINT_CHEST_LEFT 1
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#define FIFFV_POINT_CHEST_STERNUM 2
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#define FIFFV_POINT_CHEST_RIGHT 3
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/*
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* Coordinate transformation descriptor
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*/
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#define FIFFV_COORD_UNKNOWN 0
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#define FIFFV_COORD_DEVICE 1
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#define FIFFV_COORD_ISOTRAK 2
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#define FIFFV_COORD_HPI 3
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#define FIFFV_COORD_HEAD 4
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#define FIFFV_COORD_MRI 5
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#define FIFFV_COORD_MRI_SLICE 6
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#define FIFFV_COORD_MRI_DISPLAY 7
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#define FIFFV_COORD_XRAY FIFF_COORD_MRI
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#define FIFFV_COORD_XRAY_SLICE FIFF_COORD_MRI_SLICE
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#define FIFFV_COORD_CT FIFF_COORD_MRI
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#define FIFFV_COORD_CT_SLICE FIFF_COORD_MRI_SLICE
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#define FIFFV_COORD_DICOM_DEVICE 8
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#define FIFFV_COORD_IMAGING_DEVICE 9
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#define FIFFV_COORD_TORSO 100
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#define FIFFV_MOVE 1
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#define FIFFV_NO_MOVE 0
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/*
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* Artefact removal parameters
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*/
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#define FIFFV_ARTEF_MAX 100
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#define FIFFV_ARTEF_NONE -1
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#define FIFFV_ARTEF_KEEP 0
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#define FIFFV_ARTEF_JUMP 1
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#define FIFFV_ARTEF_NOJUMP 2
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/*
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* The layered sphere model
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*/
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#define FIFFV_LAYER_BRAIN 1
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#define FIFFV_LAYER_CSF 2
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#define FIFFV_LAYER_SKULL 3
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#define FIFFV_LAYER_HEAD 4
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#define FIFFV_XFIT_MAP_SURF_SENSORS 0
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#define FIFFV_XFIT_MAP_SURF_HEAD 1
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#define FIFFV_XFIT_MAP_SURF_SPHERE 2
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/*
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* Pointers
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*/
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#define FIFFV_NEXT_SEQ 0
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#define FIFFV_NEXT_NONE -1
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/*
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* Channel types
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*/
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#define FIFFV_MAGN_CH 1
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#define FIFFV_EL_CH 2
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#define FIFFV_MEG_CH FIFFV_MAGN_CH
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#define FIFFV_MCG_CH 201
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#define FIFFV_REF_MEG_CH 301
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#define FIFFV_EEG_CH FIFFV_EL_CH
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#define FIFFV_STIM_CH 3
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#define FIFFV_EOG_CH 202
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#define FIFFV_EMG_CH 302
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#define FIFFV_ECG_CH 402
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#define FIFFV_MISC_CH 502
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#define FIFFV_RESP_CH 602
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/*
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* More of those defined in MNE
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*/
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#define FIFFV_MNE_SURF_UNKNOWN -1
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#define FIFFV_MNE_SURF_LEFT_HEMI 101
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#define FIFFV_MNE_SURF_RIGHT_HEMI 102
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/*
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* These relate to the Isotrak data
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*/
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#define FIFFV_POINT_CARDINAL 1
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#define FIFFV_POINT_HPI 2
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#define FIFFV_POINT_EEG 3
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#define FIFFV_POINT_ECG FIFFV_POINT_EEG
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#define FIFFV_POINT_EXTRA 4
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#define FIFFV_POINT_LPA 1
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#define FIFFV_POINT_NASION 2
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#define FIFFV_POINT_RPA 3
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/*
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* These are the MNE fiff definitions
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*/
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#define FIFFB_MNE 350
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#define FIFFB_MNE_SOURCE_SPACE 351
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#define FIFFB_MNE_FORWARD_SOLUTION 352
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#define FIFFB_MNE_PARENT_MRI_FILE 353
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#define FIFFB_MNE_PARENT_MEAS_FILE 354
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#define FIFFB_MNE_COV 355
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#define FIFFB_MNE_INVERSE_SOLUTION 356
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#define FIFFB_MNE_NAMED_MATRIX 357
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#define FIFFB_MNE_ENV 358
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#define FIFFB_MNE_BAD_CHANNELS 359
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#define FIFFB_MNE_VERTEX_MAP 360
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#define FIFFB_MNE_EVENTS 361
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#define FIFFB_MNE_MORPH_MAP 362
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/*
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* CTF compensation data
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*/
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#define FIFFB_MNE_CTF_COMP 370
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#define FIFFB_MNE_CTF_COMP_DATA 371
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/*
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* Fiff tags associated with MNE computations (3500...)
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* 3500... Bookkeeping
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*/
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#define FIFF_MNE_ROW_NAMES 3502
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#define FIFF_MNE_COL_NAMES 3503
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#define FIFF_MNE_NROW 3504
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#define FIFF_MNE_NCOL 3505
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#define FIFF_MNE_COORD_FRAME 3506
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//FIFFB_MNE_SOURCE_SPACE #define FIFFV_COORD_MRI
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//FIFFB_MNE_FORWARD_SOLUTION FIFFV_COORD_HEAD
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//FIFFB_MNE_INVERSE_SOLUTION FIFFV_COORD_HEAD
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#define FIFF_MNE_CH_NAME_LIST 3507
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#define FIFF_MNE_FILE_NAME 3508
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/*
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* 3510... 3590... Source space or surface
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*/
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#define FIFF_MNE_SOURCE_SPACE_POINTS 3510
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#define FIFF_MNE_SOURCE_SPACE_NORMALS 3511
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#define FIFF_MNE_SOURCE_SPACE_NPOINTS 3512
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#define FIFF_MNE_SOURCE_SPACE_SELECTION 3513
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#define FIFF_MNE_SOURCE_SPACE_NUSE 3514
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#define FIFF_MNE_SOURCE_SPACE_NEAREST 3515
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#define FIFF_MNE_SOURCE_SPACE_NEAREST_DIST 3516
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#define FIFF_MNE_SOURCE_SPACE_ID 3517
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#define FIFF_MNE_SOURCE_SPACE_TYPE 3518
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#define FIFF_MNE_SOURCE_SPACE_NTRI 3590
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#define FIFF_MNE_SOURCE_SPACE_TRIANGLES 3591
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#define FIFF_MNE_SOURCE_SPACE_NUSE_TRI 3592
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#define FIFF_MNE_SOURCE_SPACE_USE_TRIANGLES 3593
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#define FIFF_MNE_SOURCE_SPACE_VOXEL_DIMS 3596
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#define FIFF_MNE_SOURCE_SPACE_INTERPOLATOR 3597
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#define FIFF_MNE_SOURCE_SPACE_MRI_FILE 3598
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#define FIFF_MNE_SOURCE_SPACE_DIST 3599
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#define FIFF_MNE_SOURCE_SPACE_DIST_LIMIT 3600
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/*
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* 3520... Forward solution
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*/
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#define FIFF_MNE_FORWARD_SOLUTION 3520
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#define FIFF_MNE_SOURCE_ORIENTATION 3521
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#define FIFF_MNE_INCLUDED_METHODS 3522
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#define FIFF_MNE_FORWARD_SOLUTION_GRAD 3523
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/*
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* 3530... Covariance matrix
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*/
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#define FIFF_MNE_COV_KIND 3530
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#define FIFF_MNE_COV_DIM 3531
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#define FIFF_MNE_COV 3532
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#define FIFF_MNE_COV_DIAG 3533
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#define FIFF_MNE_COV_EIGENVALUES 3534
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#define FIFF_MNE_COV_EIGENVECTORS 3535
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#define FIFF_MNE_COV_NFREE 3536
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/*
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* 3540... Inverse operator
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* We store the inverse operator as the eigenleads eigenfields and weights
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*/
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#define FIFF_MNE_INVERSE_LEADS 3540
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#define FIFF_MNE_INVERSE_LEADS_WEIGHTED 3546
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#define FIFF_MNE_INVERSE_FIELDS 3541
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#define FIFF_MNE_INVERSE_SING 3542
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#define FIFF_MNE_PRIORS_USED 3543
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#define FIFF_MNE_INVERSE_FULL 3544
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// This matrix includes the whitening operator as well
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// The regularization is applied
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#define FIFF_MNE_INVERSE_SOURCE_ORIENTATIONS 3545
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// The source orientations must be expressed in the coordinate system
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// given by FIFF_MNE_COORD_FRAME
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/*
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* 3550... Saved environment info
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*/
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#define FIFF_MNE_ENV_WORKING_DIR 3550
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#define FIFF_MNE_ENV_COMMAND_LINE 3551
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/*
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* 3560... Miscellaneous
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*/
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#define FIFF_MNE_PROJ_ITEM_ACTIVE 3560
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#define FIFF_MNE_EVENT_LIST 3561
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#define FIFF_MNE_HEMI 3562
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/*
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* 3570... Morphing maps
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*/
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#define FIFF_MNE_MORPH_MAP 3570
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#define FIFF_MNE_MORPH_MAP_FROM 3571
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#define FIFF_MNE_MORPH_MAP_TO 3572
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/*
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* 3580... CTF compensation data
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*/
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#define FIFF_MNE_CTF_COMP_KIND 3580
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#define FIFF_MNE_CTF_COMP_DATA 3581
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#define FIFF_MNE_CTF_COMP_CALIBRATED 3582
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/*
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* 3700... Real-Time Communication
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*/
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#define FIFF_MNE_RT_COMMAND 3700
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#define FIFF_MNE_RT_CLIENT_ID 3701
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/*
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* 3710... Real-Time Blocks
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*/
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#define FIFFB_MNE_RT_MEAS_INFO 3710
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/*
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* Fiff values associated with MNE computations
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*/
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#define FIFFV_MNE_FIXED_ORI 1
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#define FIFFV_MNE_FREE_ORI 2
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#define FIFFV_MNE_MEG 1
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#define FIFFV_MNE_EEG 2
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#define FIFFV_MNE_MEG_EEG 3
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#define FIFFV_MNE_UNKNOWN_COV 0
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#define FIFFV_MNE_SENSOR_COV 1
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#define FIFFV_MNE_NOISE_COV 1
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#define FIFFV_MNE_SOURCE_COV 2
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#define FIFFV_MNE_FMRI_PRIOR_COV 3
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#define FIFFV_MNE_SIGNAL_COV 4
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#define FIFFV_MNE_DEPTH_PRIOR_COV 5
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#define FIFFV_MNE_ORIENT_PRIOR_COV 6
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/*
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* Source space types (values of FIFF_MNE_SOURCE_SPACE_TYPE)
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*/
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#define FIFFV_MNE_SPACE_UNKNOWN -1
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#define FIFFV_MNE_SPACE_SURFACE 1
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#define FIFFV_MNE_SPACE_VOLUME 2
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#define FIFFV_MNE_SPACE_DISCRETE 3
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/*
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* Covariance matrix channel classification
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*/
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#define FIFFV_MNE_COV_CH_UNKNOWN -1
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#define FIFFV_MNE_COV_CH_MEG_MAG 0
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#define FIFFV_MNE_COV_CH_MEG_GRAD 1
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#define FIFFV_MNE_COV_CH_EEG 2
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/*
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* Projection item kinds
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*/
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#define FIFFV_MNE_PROJ_ITEM_EEG_AVREF 10
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/*
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* Additional coordinate frames
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*/
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#define FIFFV_MNE_COORD_TUFTS_EEG 300
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#define FIFFV_MNE_COORD_CTF_DEVICE 1001
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#define FIFFV_MNE_COORD_CTF_HEAD 1004
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#define FIFFV_MNE_COORD_MRI_VOXEL 2001
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#define FIFFV_MNE_COORD_RAS 2002
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#define FIFFV_MNE_COORD_MNI_TAL 2003
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#define FIFFV_MNE_COORD_FS_TAL_GTZ 2004
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#define FIFFV_MNE_COORD_FS_TAL_LTZ 2005
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#define FIFFV_MNE_COORD_FS_TAL 2006
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} // NAMESPACE
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#endif // FIFF_CONSTANTS_H
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