STSLIB::StatsMcCorrection Class Reference

Bonferroni, Holm-Bonferroni and Benjamini-Hochberg FDR adjustments for mass-univariate p-value maps. More...

#include <sts_correction.h>

Static Public Member Functions
static Eigen::MatrixXd	bonferroni (const Eigen::MatrixXd &pValues)
static Eigen::MatrixXd	holmBonferroni (const Eigen::MatrixXd &pValues)
static Eigen::MatrixXd	fdr (const Eigen::MatrixXd &pValues, double alpha=0.05)

Detailed Description

Bonferroni, Holm-Bonferroni and Benjamini-Hochberg FDR adjustments for mass-univariate p-value maps.

Multiple comparison correction methods.

Definition at line 58 of file sts_correction.h.

Member Function Documentation

bonferroni()

MatrixXd StatsMcCorrection::bonferroni ( const Eigen::MatrixXd & pValues )

static

Bonferroni correction: corrected_p = min(p * n, 1.0).

Parameters

[in]

pValues

Matrix of p-values.

Returns

Corrected p-values (same shape as input).

Definition at line 43 of file sts_correction.cpp.

fdr()

MatrixXd StatsMcCorrection::fdr ( const Eigen::MatrixXd & pValues, double alpha = 0.05 )

static

False Discovery Rate (Benjamini-Hochberg) correction.

Parameters

[in]	pValues	Matrix of p-values.
[in]	alpha	Significance level (default 0.05, used for reference only; correction is applied regardless).

Returns

Corrected p-values (same shape as input).

Definition at line 88 of file sts_correction.cpp.

holmBonferroni()

MatrixXd StatsMcCorrection::holmBonferroni ( const Eigen::MatrixXd & pValues )

static

Holm-Bonferroni step-down correction.

Parameters

[in]

pValues

Matrix of p-values.

Returns

Corrected p-values (same shape as input).

Definition at line 53 of file sts_correction.cpp.

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The documentation for this class was generated from the following files:

• src/libraries/sts/sts_correction.h
• src/libraries/sts/sts_correction.cpp