mne_source_space.cpp File Reference

Definition of the MNESourceSpace Class. More...

#include "mne_source_space.h"
#include "mne_nearest.h"
#include "mne_patch_info.h"
#include "mne_mgh_tag_group.h"
#include "mne_surface.h"
#include "filter_thread_arg.h"
#include <fiff/fiff_coord_trans.h>
#include <fiff/fiff_constants.h>
#include <fiff/fiff_sparse_matrix.h>
#include <fiff/fiff_stream.h>
#include <fiff/fiff_tag.h>
#include <utils/ioutils.h>
#include <QFile>
#include <QTextStream>
#include <QtConcurrent>
#include <math.h>

Include dependency graph for mne_source_space.cpp:

Go to the source code of this file.

Classes
class	FiffCoordTrans
	Coordinate transformation description. More...

Macros
#define	_USE_MATH_DEFINES
#define	X_51   0
#define	Y_51   1
#define	Z_51   2
#define	ALLOC_INT_51(x)
#define	MALLOC_51(x, t)
#define	ALLOC_CMATRIX_51(x, y)
#define	TRUE   1
#define	FALSE   0
#define	FAIL   -1
#define	OK   0
#define	X_17   0
#define	Y_17   1
#define	Z_17   2
#define	VEC_DOT_17(x, y)
#define	VEC_LEN_17(x)
#define	VEC_DIFF_17(from, to, diff)
#define	VEC_COPY_17(to, from)
#define	FREE_17(x)
#define	MALLOC_17(x, t)
#define	ALLOC_CMATRIX_17(x, y)
#define	ALLOC_ICMATRIX_17(x, y)
#define	FREE_CMATRIX_17(m)
#define	FREE_ICMATRIX_17(m)
#define	NNEIGHBORS   26
#define	CURVATURE_FILE_MAGIC_NUMBER   (16777215)
#define	TAG_OLD_MGH_XFORM   30
#define	TAG_OLD_COLORTABLE   1
#define	TAG_OLD_USEREALRAS   2
#define	TAG_USEREALRAS   4
#define	EVEN(n)
#define	LH_LABEL_TAG   "-lh.label"
#define	RH_LABEL_TAG   "-rh.label"

Functions
float **	mne_cmatrix_51 (int nr, int nc)

Detailed Description

Definition of the MNESourceSpace Class.

Author

Lorenz Esch lesch.nosp@m.@mgh.nosp@m..harv.nosp@m.ard..nosp@m.edu; Matti Hamalainen msh@n.nosp@m.mr.m.nosp@m.gh.ha.nosp@m.rvar.nosp@m.d.edu; Christoph Dinh chdin.nosp@m.h@nm.nosp@m.r.mgh.nosp@m..har.nosp@m.vard..nosp@m.edu

Since

0.1.0

Date

January, 2017

LICENSE

Copyright (C) 2017, Lorenz Esch, Matti Hamalainen, Christoph Dinh. All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

• Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
• Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
• Neither the name of MNE-CPP authors nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Definition in file mne_source_space.cpp.

Macro Definition Documentation

_USE_MATH_DEFINES

#define _USE_MATH_DEFINES

Definition at line 60 of file mne_source_space.cpp.

ALLOC_CMATRIX_17

#define ALLOC_CMATRIX_17	(		x,
			y )

Value:

mne_cmatrix_17((x),(y))

Definition at line 115 of file mne_source_space.cpp.

ALLOC_CMATRIX_51

#define ALLOC_CMATRIX_51	(		x,
			y )

Value:

mne_cmatrix_51((x),(y))

Definition at line 73 of file mne_source_space.cpp.

ALLOC_ICMATRIX_17

#define ALLOC_ICMATRIX_17	(		x,
			y )

Value:

mne_imatrix_17((x),(y))

Definition at line 117 of file mne_source_space.cpp.

ALLOC_INT_51

#define ALLOC_INT_51

(

x

)

Value:

MALLOC_51(x,int)

Definition at line 69 of file mne_source_space.cpp.

CURVATURE_FILE_MAGIC_NUMBER

#define CURVATURE_FILE_MAGIC_NUMBER   (16777215)

Definition at line 125 of file mne_source_space.cpp.

EVEN

#define EVEN

(

n

)

Value:

((((n) / 2) * 2) == n)

FAIL

#define FAIL   -1

Definition at line 84 of file mne_source_space.cpp.

FALSE

#define FALSE   0

Definition at line 80 of file mne_source_space.cpp.

FREE_17

#define FREE_17

(

x

)

Value:

if ((char *)(x) != NULL) free((char *)(x))

Definition at line 111 of file mne_source_space.cpp.

FREE_CMATRIX_17

#define FREE_CMATRIX_17

(

m

)

Value:

mne_free_cmatrix_17((m))

Definition at line 119 of file mne_source_space.cpp.

FREE_ICMATRIX_17

#define FREE_ICMATRIX_17

(

m

)

Value:

mne_free_icmatrix_17((m))

Definition at line 121 of file mne_source_space.cpp.

LH_LABEL_TAG

#define LH_LABEL_TAG   "-lh.label"

Definition at line 2176 of file mne_source_space.cpp.

MALLOC_17

#define MALLOC_17	(		x,
			t )

Value:

(t *)malloc((x)*sizeof(t))

Definition at line 113 of file mne_source_space.cpp.

MALLOC_51

#define MALLOC_51	(		x,
			t )

Value:

(t *)malloc((x)*sizeof(t))

Definition at line 71 of file mne_source_space.cpp.

NNEIGHBORS

#define NNEIGHBORS   26

Definition at line 123 of file mne_source_space.cpp.

OK

#define OK   0

Definition at line 88 of file mne_source_space.cpp.

RH_LABEL_TAG

#define RH_LABEL_TAG   "-rh.label"

Definition at line 2177 of file mne_source_space.cpp.

TAG_OLD_COLORTABLE

#define TAG_OLD_COLORTABLE   1

Definition at line 128 of file mne_source_space.cpp.

TAG_OLD_MGH_XFORM

#define TAG_OLD_MGH_XFORM   30

Definition at line 127 of file mne_source_space.cpp.

TAG_OLD_USEREALRAS

#define TAG_OLD_USEREALRAS   2

Definition at line 129 of file mne_source_space.cpp.

TAG_USEREALRAS

#define TAG_USEREALRAS   4

Definition at line 130 of file mne_source_space.cpp.

TRUE

#define TRUE   1

Definition at line 76 of file mne_source_space.cpp.

VEC_COPY_17

#define VEC_COPY_17	(		to,
			from )

Value:

    {\
    (to)[X_17] = (from)[X_17];\
    (to)[Y_17] = (from)[Y_17];\
    (to)[Z_17] = (from)[Z_17];\
}

Definition at line 105 of file mne_source_space.cpp.

VEC_DIFF_17

#define VEC_DIFF_17	(		from,
			to,
			diff )

Value:

    {\
    (diff)[X_17] = (to)[X_17] - (from)[X_17];\
    (diff)[Y_17] = (to)[Y_17] - (from)[Y_17];\
    (diff)[Z_17] = (to)[Z_17] - (from)[Z_17];\
}

Definition at line 99 of file mne_source_space.cpp.

VEC_DOT_17

#define VEC_DOT_17	(		x,
			y )

Value:

((x)[X_17]*(y)[X_17] + (x)[Y_17]*(y)[Y_17] + (x)[Z_17]*(y)[Z_17])

Definition at line 95 of file mne_source_space.cpp.

VEC_LEN_17

#define VEC_LEN_17

(

x

)

Value:

sqrt(VEC_DOT_17(x,x))

Definition at line 97 of file mne_source_space.cpp.

X_17

#define X_17   0

Definition at line 91 of file mne_source_space.cpp.

X_51

#define X_51   0

Definition at line 65 of file mne_source_space.cpp.

Y_17

#define Y_17   1

Definition at line 92 of file mne_source_space.cpp.

Y_51

#define Y_51   1

Definition at line 66 of file mne_source_space.cpp.

Z_17

#define Z_17   2

Definition at line 93 of file mne_source_space.cpp.

Z_51

#define Z_51   2

Definition at line 67 of file mne_source_space.cpp.

Function Documentation

mne_cmatrix_51()

float ** mne_cmatrix_51	(	int	nr,
		int	nc )

Definition at line 212 of file mne_source_space.cpp.