mne_process_description.h

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//=============================================================================================================
 
#ifndef MNE_PROCESS_DESCRIPTION_H
#define MNE_PROCESS_DESCRIPTION_H
 
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "mne_global.h"
 
#include <fiff/fiff_evoked_set.h>
 
#include <QString>
#include <QStringList>
#include <QVector>
#include <QList>
 
//=============================================================================================================
// DEFINE NAMESPACE MNELIB
//=============================================================================================================
 
namespace MNELIB
{
 
//=============================================================================================================
struct MNESHARED_EXPORT CovDefinition
{
    QVector<unsigned int> events; 
    unsigned int ignore = 0;      
    float delay = 0.0f;           
    float tmin = -0.2f;           
    float tmax = 0.0f;            
    float bmin = 0.0f;            
    float bmax = 0.0f;            
    bool doBaseline = false;      
};
 
//=============================================================================================================
struct MNESHARED_EXPORT CovDescription
{
    QList<CovDefinition> defs;    
    FIFFLIB::RejectionParams rej; 
    bool removeSampleMean = true; 
    bool fixSkew = false;         
    QString filename;             
    QString eventFile;            
    QString logFile;              
};
 
//=============================================================================================================
struct MNESHARED_EXPORT FilterSettings
{
    bool filterOn = true;          
    int filterSize = 4096;         
    int taperSize = 2048;          
    float highpass = 0.0f;         
    float highpassWidth = 0.0f;    
    float lowpass = 40.0f;         
    float lowpassWidth = 5.0f;     
    float eogHighpass = 0.0f;      
    float eogHighpassWidth = 0.0f; 
    float eogLowpass = 40.0f;      
    float eogLowpassWidth = 5.0f;  
};
 
//=============================================================================================================
struct MNESHARED_EXPORT ProcessingSettings
{
    // Working directory
    QString workingDir;
 
    // Input
    QStringList rawFiles;        
    QStringList eventFiles;      
    int compensateTo = -1;       
    bool allowMaxShield = false; 
 
    // Filter
    FilterSettings filter;
 
    // Events output
    QStringList eventsOutFiles;      
    bool saveAllEvents = false;      
    QString digTrigger;              
    unsigned int digTriggerMask = 0; 
 
    // Projection
    QStringList projFiles;            
    int projOn = -1;                  
    bool makeProj = false;            
    int projEvent = -1;               
    float projTmin = -1.0f;           
    float projTmax = -1.0f;           
    int projNGrad = 5;                
    int projNMag = 8;                 
    int projNEeg = 0;                 
    float projGradReject = 2000e-13f; 
    float projMagReject = 3e-12f;     
    float projEegReject = 50e-6f;     
    QString saveProjTag;              
    bool saveProjAugmented = false;   
 
    // Save
    QStringList saveFiles;        
    bool omitSubjectInfo = false; 
    int decimation = 1;           
    long splitSize = -1;          
 
    // Averaging
    QStringList aveFiles; 
    QString saveAveTag;   
    QString grandAveFile; 
 
    // Covariance
    QStringList covFiles; 
    QString saveCovTag;   
    QString grandCovFile; 
 
    // Misc
    bool saveHere = false; 
};
 
} // namespace MNELIB
 
#endif // MNE_PROCESS_DESCRIPTION_H