evoked data set More...

#include <fiff_evoked_set.h>

Public Types
typedef QSharedPointer< FiffEvokedSet >	SPtr
typedef QSharedPointer< const FiffEvokedSet >	ConstSPtr

Public Member Functions
	FiffEvokedSet ()
	FiffEvokedSet (QIODevice &p_IODevice)
	FiffEvokedSet (const FiffEvokedSet &p_FiffEvokedSet)
	~FiffEvokedSet ()
void	clear ()
FiffEvokedSet	pick_channels (const QStringList &include=defaultQStringList, const QStringList &exclude=defaultQStringList) const
bool	compensate_to (FiffEvokedSet &p_FiffEvokedSet, fiff_int_t to) const
bool	find_evoked (const FiffEvokedSet &p_FiffEvokedSet) const
bool	save (const QString &fileName) const

Static Public Member Functions
static bool	read (QIODevice &p_IODevice, FiffEvokedSet &p_FiffEvokedSet, QPair< float, float > baseline=defaultFloatPair, bool proj=true)
static FiffEvokedSet	computeGrandAverage (const QList< FiffEvokedSet > &evokedSets)
static FiffEvokedSet	computeAverages (const FiffRawData &raw, const AverageDescription &desc, const Eigen::MatrixXi &events, QString &log)
static bool	checkArtifacts (const Eigen::MatrixXd &epoch, const FiffInfo &info, const QStringList &bads, const RejectionParams &rej, QString &reason)
static void	subtractBaseline (Eigen::MatrixXd &epoch, int bminSamp, int bmaxSamp)
	Subtract baseline from each channel of an epoch.

Public Attributes
FiffInfo	info
QList< FiffEvoked >	evoked

Detailed Description

evoked data set

Fiff evoked data set

Definition at line 139 of file fiff_evoked_set.h.

Member Typedef Documentation

◆ ConstSPtr

typedef QSharedPointer<const FiffEvokedSet> FIFFLIB::FiffEvokedSet::ConstSPtr

Const shared pointer type for FiffEvokedSet.

Definition at line 144 of file fiff_evoked_set.h.

◆ SPtr

typedef QSharedPointer<FiffEvokedSet> FIFFLIB::FiffEvokedSet::SPtr

Shared pointer type for FiffEvokedSet.

Definition at line 143 of file fiff_evoked_set.h.

Constructor & Destructor Documentation

◆ FiffEvokedSet() [1/3]

FiffEvokedSet::FiffEvokedSet ( )

Constructs a fiff evoked data set.

Definition at line 75 of file fiff_evoked_set.cpp.

◆ FiffEvokedSet() [2/3]

FiffEvokedSet::FiffEvokedSet ( QIODevice & p_IODevice )

Constructs a fiff evoked data set, by reading from a IO device.

Parameters

[in] p_IODevice IO device to read from the evoked data set.

Definition at line 83 of file fiff_evoked_set.cpp.

◆ FiffEvokedSet() [3/3]

FiffEvokedSet::FiffEvokedSet ( const FiffEvokedSet & p_FiffEvokedSet )

Copy constructor.

Parameters

[in] p_FiffEvokedSet Fiff evoked data set which should be copied.

Definition at line 97 of file fiff_evoked_set.cpp.

◆ ~FiffEvokedSet()

FiffEvokedSet::~FiffEvokedSet ( )

Destroys the fiff evoked data set.

Definition at line 105 of file fiff_evoked_set.cpp.

Member Function Documentation

◆ checkArtifacts()

bool FiffEvokedSet::checkArtifacts	(	const Eigen::MatrixXd &	epoch,
		const FiffInfo &	info,
		const QStringList &	bads,
		const RejectionParams &	rej,
		QString &	reason )

static

Check whether an epoch passes artifact rejection criteria.

Parameters

[in]	epoch	Epoch data (nChannels x nSamples).
[in]	info	Channel info.
[in]	bads	List of bad channel names.
[in]	rej	Rejection parameters.
[out]	reason	Rejection reason string (set only when rejected).

Returns: true if epoch is clean (not rejected).

Definition at line 449 of file fiff_evoked_set.cpp.

◆ clear()

void FiffEvokedSet::clear ( )

Initializes fiff evoked data set.

Definition at line 111 of file fiff_evoked_set.cpp.

◆ compensate_to()

bool FiffEvokedSet::compensate_to	(	FiffEvokedSet &	p_FiffEvokedSet,
		fiff_int_t	to ) const

mne_compensate_to

Apply compensation to the data as desired

Parameters

[in]	to	desired compensation in the output.
[in,out]	p_FiffEvokedSet	Evoked set to compensate.

Returns: true if succeeded, false otherwise.

Definition at line 143 of file fiff_evoked_set.cpp.

◆ computeAverages()

FiffEvokedSet FiffEvokedSet::computeAverages	(	const FiffRawData &	raw,
		const AverageDescription &	desc,
		const Eigen::MatrixXi &	events,
		QString &	log )

static

Compute epoch-based averages from raw data according to an averaging description.

For each category in the description, matching events are epoched from the raw data, artifact-rejected, baseline-corrected, and averaged into a FiffEvoked entry.

Parameters

[in]	raw	The raw data.
[in]	desc	The averaging description (categories, rejection, etc.).
[in]	events	Event matrix (nEvents x 3): [sample, from, to].
[out]	log	Processing log output.

Returns: FiffEvokedSet containing one FiffEvoked per category, or empty set on failure.

Definition at line 321 of file fiff_evoked_set.cpp.

◆ computeGrandAverage()

FiffEvokedSet FiffEvokedSet::computeGrandAverage ( const QList< FiffEvokedSet > & evokedSets )

static

Compute a grand average across multiple evoked data sets. Corresponding categories are averaged by summing data and dividing by the number of sets. The nave field accumulates the total count.

Parameters

[in] evokedSets List of evoked data sets to combine.

Returns: The grand-average evoked set, or an empty set if input is empty.

Definition at line 274 of file fiff_evoked_set.cpp.

◆ find_evoked()

bool FiffEvokedSet::find_evoked ( const FiffEvokedSet & p_FiffEvokedSet ) const

fiff_find_evoked

Find evoked data sets

Parameters

[out] p_FiffEvokedSet The read evoked data set.

Returns: true when any set was found, false otherwise.

Definition at line 171 of file fiff_evoked_set.cpp.

◆ pick_channels()

FiffEvokedSet FiffEvokedSet::pick_channels	(	const QStringList &	include = defaultQStringList,
		const QStringList &	exclude = defaultQStringList ) const

fiff_pick_channels_evoked

Pick desired channels from evoked-response data

Parameters

[in]	include	- Channels to include (if empty, include all available).
[in]	exclude	- Channels to exclude (if empty, do not exclude any).

Returns: the desired fiff evoked data set.

Definition at line 119 of file fiff_evoked_set.cpp.

◆ read()

bool FiffEvokedSet::read	(	QIODevice &	p_IODevice,
		FiffEvokedSet &	p_FiffEvokedSet,
		QPair< float, float >	baseline = defaultFloatPair,
		bool	proj = true )

static

fiff_read_evoked

Wrapper for the FiffEvokedDataSet::read_evoked static function

Read one evoked data set

Parameters

[in]	p_IODevice	An fiff IO device like a fiff QFile or QTCPSocket.
[out]	p_FiffEvokedSet	The read evoked data set.
[in]	baseline	The time interval to apply rescaling / baseline correction. If None do not apply it. If baseline is (a, b). the interval is between "a (s)" and "b (s)". If a is None the beginning of the data is used and if b is None then b is set to the end of the interval. If baseline is equal ot (None, None) all the time interval is used. If None, no correction is applied.
[in]	proj	Apply SSP projection vectors (optional, default = true).

Returns: true when successful, false otherwise.

Definition at line 189 of file fiff_evoked_set.cpp.

◆ save()

bool FiffEvokedSet::save ( const QString & fileName ) const

Save this evoked data set to a FIFF file.

Parameters

[in] fileName Output file path.

Returns: true on success.

Definition at line 250 of file fiff_evoked_set.cpp.

◆ subtractBaseline()

void FiffEvokedSet::subtractBaseline	(	Eigen::MatrixXd &	epoch,
		int	bminSamp,
		int	bmaxSamp )

static

Subtract baseline from each channel of an epoch.

For each row (channel), the mean of the samples in [bminSamp, bminSamp+nBase) is subtracted.

Parameters

[in,out]	epoch	Data matrix (channels x samples) to correct in-place.
[in]	bminSamp	First baseline sample (clamped to 0).
[in]	bmaxSamp	Last baseline sample (clamped to epoch length - 1).

Definition at line 306 of file fiff_evoked_set.cpp.

Member Data Documentation

◆ evoked

QList<FiffEvoked> FIFFLIB::FiffEvokedSet::evoked

List of Fiff Evoked Data.

Definition at line 312 of file fiff_evoked_set.h.

◆ info

FiffInfo FIFFLIB::FiffEvokedSet::info

FIFF measurement information.

Definition at line 311 of file fiff_evoked_set.h.

The documentation for this class was generated from the following files:

src/libraries/fiff/fiff_evoked_set.h
src/libraries/fiff/fiff_evoked_set.cpp

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Detailed Description

Member Typedef Documentation

◆ ConstSPtr

◆ SPtr

Constructor & Destructor Documentation

◆ FiffEvokedSet() [1/3]

◆ FiffEvokedSet() [2/3]

◆ FiffEvokedSet() [3/3]

◆ ~FiffEvokedSet()

Member Function Documentation

◆ checkArtifacts()

◆ clear()

◆ compensate_to()

◆ computeAverages()

◆ computeGrandAverage()

◆ find_evoked()

◆ pick_channels()

◆ read()

◆ save()

◆ subtractBaseline()

Member Data Documentation

◆ evoked

◆ info