Dipole Fit setting implementation. More...

#include <dipole_fit_settings.h>

Public Types
typedef QSharedPointer< DipoleFitSettings >	SPtr

typedef QSharedPointer< const DipoleFitSettings >	ConstSPtr

Public Member Functions
	DipoleFitSettings ()

	DipoleFitSettings (int argc, char *argv)

virtual	~DipoleFitSettings ()

void	checkIntegrity ()

Public Attributes
QString	bemname

Eigen::Vector3f	r0

bool	accurate

QString	mriname

QString	guessname

QString	guess_surfname

float	guess_rad

float	guess_mindist

float	guess_exclude

float	guess_grid

QString	noisename

float	grad_std

float	mag_std

float	eeg_std

bool	diagnoise

QString	measname

bool	is_raw

char *	badname

bool	include_meg

bool	include_eeg

float	tmin

float	tmax

float	tstep

float	integ

float	bmin

float	bmax

bool	do_baseline

int	setno

bool	verbose

MNELIB::mneFilterDefRec	filter

QStringList	projnames

bool	omit_data_proj

QString	eeg_model_file

QString	eeg_model_name

float	eeg_sphere_rad

bool	scale_eeg_pos

float	mag_reg

bool	fit_mag_dipoles

float	grad_reg

float	eeg_reg

QString	dipname

QString	bdipname

bool	gui

Detailed Description

Dipole Fit setting implementation.

Implements the dipole fit setting parser

Definition at line 81 of file dipole_fit_settings.h.

Member Typedef Documentation

◆ ConstSPtr

typedef QSharedPointer<const DipoleFitSettings> INVERSELIB::DipoleFitSettings::ConstSPtr

Const shared pointer type for DipoleFitSettings.

Definition at line 85 of file dipole_fit_settings.h.

◆ SPtr

typedef QSharedPointer<DipoleFitSettings> INVERSELIB::DipoleFitSettings::SPtr

Shared pointer type for DipoleFitSettings.

Definition at line 84 of file dipole_fit_settings.h.

Constructor & Destructor Documentation

◆ DipoleFitSettings() [1/2]

DipoleFitSettings::DipoleFitSettings ( )

explicit

Default Constructor

Definition at line 34 of file dipole_fit_settings.cpp.

◆ DipoleFitSettings() [2/2]

DipoleFitSettings::DipoleFitSettings	(	int *	argc,
		char **	argv
	)

explicit

Constructs Dipole Fit Settings

Parameters

[in]	argc	(argument count) is an integer that indicates how many arguments were entered on the command line when the program was started.
[in]	argv	(argument vector) is an array of pointers to arrays of character objects. The array objects are null-terminated strings, representing the arguments that were entered on the command line when the program was started.

Definition at line 41 of file dipole_fit_settings.cpp.

◆ ~DipoleFitSettings()

DipoleFitSettings::~DipoleFitSettings ( )

virtual

Destructs the Dipole Fit Settings

Definition at line 56 of file dipole_fit_settings.cpp.

Member Function Documentation

◆ checkIntegrity()

void DipoleFitSettings::checkIntegrity ( )

Check whether Dipole Fit Settings are correctly set.

Definition at line 121 of file dipole_fit_settings.cpp.

Member Data Documentation

◆ accurate

bool INVERSELIB::DipoleFitSettings::accurate

Use accurate coil definitions?.

Definition at line 117 of file dipole_fit_settings.h.

◆ badname

char* INVERSELIB::DipoleFitSettings::badname

Bad channels.

Definition at line 135 of file dipole_fit_settings.h.

◆ bdipname

QString INVERSELIB::DipoleFitSettings::bdipname

Output file in bdip format.

Definition at line 161 of file dipole_fit_settings.h.

◆ bemname

QString INVERSELIB::DipoleFitSettings::bemname

Boundary-element model.

Definition at line 115 of file dipole_fit_settings.h.

◆ bmin

float INVERSELIB::DipoleFitSettings::bmin

Possibility to set these from the command line.

Definition at line 142 of file dipole_fit_settings.h.

◆ diagnoise

bool INVERSELIB::DipoleFitSettings::diagnoise

Use only the diagonals of the noise-covariance matrix.

Definition at line 131 of file dipole_fit_settings.h.

◆ dipname

QString INVERSELIB::DipoleFitSettings::dipname

Output file in dip format.

Definition at line 160 of file dipole_fit_settings.h.

◆ do_baseline

bool INVERSELIB::DipoleFitSettings::do_baseline

Are both baseline limits set?.

Definition at line 144 of file dipole_fit_settings.h.

◆ eeg_model_file

QString INVERSELIB::DipoleFitSettings::eeg_model_file

File of EEG sphere model specifications.

Definition at line 151 of file dipole_fit_settings.h.

◆ eeg_model_name

QString INVERSELIB::DipoleFitSettings::eeg_model_name

Name of the EEG model to use.

Definition at line 152 of file dipole_fit_settings.h.

◆ eeg_reg

float INVERSELIB::DipoleFitSettings::eeg_reg

Noise-covariance matrix regularization for EEG .

Definition at line 159 of file dipole_fit_settings.h.

◆ eeg_sphere_rad

float INVERSELIB::DipoleFitSettings::eeg_sphere_rad

Scalp radius to use in EEG sphere model.

Definition at line 153 of file dipole_fit_settings.h.

◆ grad_reg

float INVERSELIB::DipoleFitSettings::grad_reg

Noise-covariance matrix regularization for EEG (planar gradiometers).

Definition at line 158 of file dipole_fit_settings.h.

◆ grad_std

float INVERSELIB::DipoleFitSettings::grad_std

Standard deviations to be used if noise covariance is not specified.

Definition at line 128 of file dipole_fit_settings.h.

◆ guess_exclude

float INVERSELIB::DipoleFitSettings::guess_exclude

Exclude points closer than this to the origin.

Definition at line 124 of file dipole_fit_settings.h.

◆ guess_grid

float INVERSELIB::DipoleFitSettings::guess_grid

Grid spacing.

Definition at line 125 of file dipole_fit_settings.h.

◆ guess_mindist

float INVERSELIB::DipoleFitSettings::guess_mindist

Minimum allowed distance to the surface.

Definition at line 123 of file dipole_fit_settings.h.

◆ guess_rad

float INVERSELIB::DipoleFitSettings::guess_rad

Radius of spherical guess surface.

Definition at line 122 of file dipole_fit_settings.h.

◆ guess_surfname

QString INVERSELIB::DipoleFitSettings::guess_surfname

Load the inner skull surface from this BEM file.

Definition at line 121 of file dipole_fit_settings.h.

◆ guessname

QString INVERSELIB::DipoleFitSettings::guessname

Initial guess grid (if not present, the values below will be employed to generate the grid).

Definition at line 120 of file dipole_fit_settings.h.

◆ gui

bool INVERSELIB::DipoleFitSettings::gui

Should the gui been shown?.

Definition at line 163 of file dipole_fit_settings.h.

◆ include_eeg

bool INVERSELIB::DipoleFitSettings::include_eeg

Use EEG?.

Definition at line 137 of file dipole_fit_settings.h.

◆ include_meg

bool INVERSELIB::DipoleFitSettings::include_meg

Use MEG?.

Definition at line 136 of file dipole_fit_settings.h.

◆ is_raw

bool INVERSELIB::DipoleFitSettings::is_raw

Is this a raw data file.

Definition at line 134 of file dipole_fit_settings.h.

◆ mag_reg

float INVERSELIB::DipoleFitSettings::mag_reg

Noise-covariance matrix regularization for MEG (magnetometers and axial gradiometers) .

Definition at line 155 of file dipole_fit_settings.h.

◆ measname

QString INVERSELIB::DipoleFitSettings::measname

Data file.

Definition at line 133 of file dipole_fit_settings.h.

◆ mriname

QString INVERSELIB::DipoleFitSettings::mriname

Gives the MRI <-> head transform.

Definition at line 118 of file dipole_fit_settings.h.

◆ noisename

QString INVERSELIB::DipoleFitSettings::noisename

Noise-covariance matrix.

Definition at line 127 of file dipole_fit_settings.h.

◆ projnames

QStringList INVERSELIB::DipoleFitSettings::projnames

Projection file names.

Definition at line 148 of file dipole_fit_settings.h.

◆ r0

Eigen::Vector3f INVERSELIB::DipoleFitSettings::r0

Sphere model origin .

Definition at line 116 of file dipole_fit_settings.h.

◆ scale_eeg_pos

bool INVERSELIB::DipoleFitSettings::scale_eeg_pos

Scale the electrode locations to scalp in the sphere model.

Definition at line 154 of file dipole_fit_settings.h.

◆ setno

int INVERSELIB::DipoleFitSettings::setno

Which data set.

Definition at line 145 of file dipole_fit_settings.h.

◆ tmin

float INVERSELIB::DipoleFitSettings::tmin