coherence.cpp

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//=============================================================================================================
//=============================================================================================================
// INCLUDES
//=============================================================================================================
 
#include "coherency.h"
#include "coherence.h"
#include "../network/networknode.h"
#include "../network/networkedge.h"
#include "../network/network.h"
#include "../connectivitysettings.h"
 
//=============================================================================================================
// QT INCLUDES
//=============================================================================================================
 
#include <QDebug>
#include <QtConcurrent>
 
//=============================================================================================================
// EIGEN INCLUDES
//=============================================================================================================
 
#include <unsupported/Eigen/FFT>
 
//=============================================================================================================
// USED NAMESPACES
//=============================================================================================================
 
using namespace CONNECTIVITYLIB;
using namespace Eigen;
 
//=============================================================================================================
// DEFINE GLOBAL METHODS
//=============================================================================================================
 
//=============================================================================================================
// DEFINE MEMBER METHODS
//=============================================================================================================
 
Coherence::Coherence()
{
}
 
//*******************************************************************************************************
 
Network Coherence::calculate(ConnectivitySettings& connectivitySettings)
{
    Network finalNetwork("COH");
 
    if(connectivitySettings.isEmpty()) {
        qDebug() << "Coherence::calculate - Input data is empty";
        return finalNetwork;
    }
 
    if(AbstractMetric::m_bStorageModeIsActive == false) {
        connectivitySettings.clearIntermediateData();
    }
 
    finalNetwork.setSamplingFrequency(connectivitySettings.getSamplingFrequency());
 
    // Check if start and bin amount need to be reset to full spectrum
    int iNfft = connectivitySettings.getFFTSize();
    int iNFreqs = int(floor(iNfft / 2.0)) + 1;
 
    if(m_iNumberBinStart == -1 ||
       m_iNumberBinAmount == -1 ||
       m_iNumberBinStart > iNFreqs ||
       m_iNumberBinAmount > iNFreqs ||
       m_iNumberBinAmount + m_iNumberBinStart > iNFreqs) {
        qDebug() << "Coherence::calculate - Resetting to full spectrum";
        AbstractMetric::m_iNumberBinStart = 0;
        AbstractMetric::m_iNumberBinAmount = iNFreqs;
    }
 
    // Pass information about the FFT length. Use iNFreqs because we only use the half spectrum
    finalNetwork.setFFTSize(iNFreqs);
    finalNetwork.setUsedFreqBins(AbstractMetric::m_iNumberBinAmount);
 
    //Create nodes
    int rows = connectivitySettings.at(0).matData.rows();
    RowVectorXf rowVert = RowVectorXf::Zero(3);
 
    for(int i = 0; i < rows; ++i) {
        rowVert = RowVectorXf::Zero(3);
 
        if(connectivitySettings.getNodePositions().rows() != 0 && i < connectivitySettings.getNodePositions().rows()) {
            rowVert(0) = connectivitySettings.getNodePositions().row(i)(0);
            rowVert(1) = connectivitySettings.getNodePositions().row(i)(1);
            rowVert(2) = connectivitySettings.getNodePositions().row(i)(2);
        }
 
        finalNetwork.append(NetworkNode::SPtr(new NetworkNode(i, rowVert)));
    }
 
    //Calculate all-to-all coherence matrix over epochs
    Coherency::calculateAbs(finalNetwork,
                             connectivitySettings);;
 
    return finalNetwork;
}