mne_surface_or_volume.cpp File Reference

Definition of the MNE Surface or Volume (MneSurfaceOrVolume) Class. More...

#include "mne_surface_or_volume.h"
#include "mne_surface_old.h"
#include "mne_source_space_old.h"
#include "mne_patch_info.h"
#include "mne_nearest.h"
#include "filter_thread_arg.h"
#include "mne_triangle.h"
#include "mne_msh_display_surface.h"
#include "mne_proj_data.h"
#include "mne_vol_geom.h"
#include "mne_mgh_tag_group.h"
#include "mne_mgh_tag.h"
#include <fiff/fiff_stream.h>
#include <fiff/c/fiff_digitizer_data.h>
#include <fiff/fiff_dig_point.h>
#include <utils/sphere.h>
#include <utils/ioutils.h>
#include <QFile>
#include <QCoreApplication>
#include <QtConcurrent>
#include <math.h>
#include <Eigen/Dense>
#include <Eigen/Sparse>
#include <unistd.h>

Include dependency graph for mne_surface_or_volume.cpp:

Go to the source code of this file.

Macros
#define	_USE_MATH_DEFINES
#define	TRUE   1
#define	FALSE   0
#define	FAIL   -1
#define	OK   0
#define	X_17   0
#define	Y_17   1
#define	Z_17   2
#define	VEC_DOT_17(x, y)   ((x)[X_17]*(y)[X_17] + (x)[Y_17]*(y)[Y_17] + (x)[Z_17]*(y)[Z_17])
#define	VEC_LEN_17(x)   sqrt(VEC_DOT_17(x,x))
#define	VEC_DIFF_17(from, to, diff)
#define	VEC_COPY_17(to, from)
#define	CROSS_PRODUCT_17(x, y, xy)
#define	MALLOC_17(x, t)   (t *)malloc((x)*sizeof(t))
#define	REALLOC_17(x, y, t)   (t *)((x == NULL) ? malloc((y)*sizeof(t)) : realloc((x),(y)*sizeof(t)))
#define	ALLOC_INT_17(x)   MALLOC_17(x,int)
#define	ALLOC_CMATRIX_17(x, y)   mne_cmatrix_17((x),(y))
#define	FREE_17(x)   if ((char *)(x) != NULL) free((char *)(x))
#define	FREE_CMATRIX_17(m)   mne_free_cmatrix_17((m))
#define	FREE_ICMATRIX_17(m)   mne_free_icmatrix_17((m))
#define	NNEIGHBORS   26
#define	CURVATURE_FILE_MAGIC_NUMBER   (16777215)
#define	TAG_MGH_XFORM   31
#define	TAG_SURF_GEOM   21
#define	TAG_OLD_USEREALRAS   2
#define	TAG_COLORTABLE   5
#define	TAG_OLD_MGH_XFORM   30
#define	TAG_OLD_COLORTABLE   1
#define	TAG_USEREALRAS   4
#define	ALLOC_ICMATRIX_17(x, y)   mne_imatrix_17((x),(y))
#define	LH_LABEL_TAG   "-lh.label"
#define	RH_LABEL_TAG   "-rh.label"
#define	EVEN(n)   ((((n) / 2) * 2) == n)

Functions
float **	mne_cmatrix_17 (int numPoints, int numDim)
void	mne_free_cmatrix_17 (float **m)
void	mne_free_icmatrix_17 (int **m)
int **	mne_imatrix_17 (int nr, int nc)
Eigen::MatrixXf	toFloatEigenMatrix_17 (float **mat, const int m, const int n)
void	fromFloatEigenMatrix_17 (const Eigen::MatrixXf &from_mat, float **&to_mat, const int m, const int n)
void	fromFloatEigenMatrix_17 (const Eigen::MatrixXf &from_mat, float **&to_mat)
void	fromIntEigenMatrix_17 (const Eigen::MatrixXi &from_mat, int **&to_mat, const int m, const int n)
void	fromIntEigenMatrix_17 (const Eigen::MatrixXi &from_mat, int **&to_mat)
void	mne_sort_nearest_by_nearest (MneNearest *points, int npoint)

Detailed Description

Definition of the MNE Surface or Volume (MneSurfaceOrVolume) Class.

Author

Lorenz Esch lesch.nosp@m.@mgh.nosp@m..harv.nosp@m.ard..nosp@m.edu; Matti Hamalainen msh@n.nosp@m.mr.m.nosp@m.gh.ha.nosp@m.rvar.nosp@m.d.edu; Christoph Dinh chdin.nosp@m.h@nm.nosp@m.r.mgh.nosp@m..har.nosp@m.vard..nosp@m.edu

Since

0.1.0

Date

January, 2017

LICENSE

Copyright (C) 2017, Lorenz Esch, Matti Hamalainen, Christoph Dinh. All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

• Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
• Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
• Neither the name of MNE-CPP authors nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Definition in file mne_surface_or_volume.cpp.

Macro Definition Documentation

CROSS_PRODUCT_17

#define CROSS_PRODUCT_17	(		x,
			y,
			xy
	)

Value:

    {\
    (xy)[X_17] =   (x)[Y_17]*(y)[Z_17]-(y)[Y_17]*(x)[Z_17];\
    (xy)[Y_17] = -((x)[X_17]*(y)[Z_17]-(y)[X_17]*(x)[Z_17]);\
    (xy)[Z_17] =   (x)[X_17]*(y)[Y_17]-(y)[X_17]*(x)[Y_17];\
    }

Definition at line 125 of file mne_surface_or_volume.cpp.

VEC_COPY_17

#define VEC_COPY_17	(		to,
			from
	)

Value:

    {\
    (to)[X_17] = (from)[X_17];\
    (to)[Y_17] = (from)[Y_17];\
    (to)[Z_17] = (from)[Z_17];\
    }

Definition at line 119 of file mne_surface_or_volume.cpp.

VEC_DIFF_17

#define VEC_DIFF_17	(		from,
			to,
			diff
	)

Value:

    {\
    (diff)[X_17] = (to)[X_17] - (from)[X_17];\
    (diff)[Y_17] = (to)[Y_17] - (from)[Y_17];\
    (diff)[Z_17] = (to)[Z_17] - (from)[Z_17];\
    }

Definition at line 113 of file mne_surface_or_volume.cpp.