mne Directory Reference

Directory dependency graph for mne:

Files
	filter_thread_arg.cpp
	Implementation of MNELIB::FilterThreadArg.
	filter_thread_arg.h
	Argument record passed to a background raw-data filter worker.
	mne.cpp
	Implementation of the MNELIB::MNE static facade.
	mne.h
	Static MNE facade providing matlab-toolbox-compatible high-level helpers across MNELIB.
	mne_bem.cpp
	Implementation of MNELIB::MNEBem.
	mne_bem.h
	Boundary element model bundle (inner skull, outer skull, outer skin) loaded from -bem.fif.
	mne_bem_surface.cpp
	Implementation of MNELIB::MNEBemSurface.
	mne_bem_surface.h
	Single closed BEM surface (triangulation, normals, conductivity).
	mne_ch_selection.h
	Named subset of channels (e.g. "Left-temporal") loaded from an MNE .sel file.
	mne_cluster_info.cpp
	Implementation of MNELIB::MNEClusterInfo.
	mne_cluster_info.h
	Bookkeeping for a label-restricted clustering of source-space leadfield columns.
	mne_cortical_map.cpp
	Implementation of MNELIB::MNECorticalMap.
	mne_cortical_map.h
	Vertex-to-vertex map between two cortical surfaces (e.g. subject -> fsaverage).
	mne_cov_matrix.cpp
	Implementation of MNELIB::MNECovMatrix.
	mne_cov_matrix.h
	Legacy MNE-C noise covariance container preserved for cross-toolchain compatibility.
	mne_ctf_comp_data.cpp
	Implementation of MNELIB::MNECTFCompData.
	mne_ctf_comp_data.h
	Single CTF reference-sensor compensation matrix labelled by kind.
	mne_ctf_comp_data_set.cpp
	Implementation of MNELIB::MNECTFCompDataSet.
	mne_ctf_comp_data_set.h
	Set of CTF compensation matrices plus the currently active grade.
	mne_deriv.cpp
	Implementation of MNELIB::MNEDeriv.
	mne_deriv.h
	Single channel derivation (linear combination of physical channels exposed as a virtual channel).
	mne_deriv_set.cpp
	Implementation of MNELIB::MNEDerivSet.
	mne_deriv_set.h
	Collection of MNELIB::MNEDeriv objects forming a derivation montage.
	mne_description_parser.cpp
	Implementation of MNELIB::MNEDescriptionParser.
	mne_description_parser.h
	Parser for the legacy MNE-C .ave / .cov plain-text description files.
	mne_epoch_data.cpp
	Implementation of MNELIB::MNEEpochData.
	mne_epoch_data.h
	Single epoch (one trial slice of preprocessed sensor data) with timing and rejection metadata.
	mne_epoch_data_list.cpp
	Implementation of MNELIB::MNEEpochDataList.
	mne_epoch_data_list.h
	Ordered list of MNELIB::MNEEpochData objects sharing a common FIFFLIB::FiffInfo.
	mne_event.h
	Single recorded event (sample, previous and new trigger code).
	mne_event_list.h
	Ordered list of MNELIB::MNEEvent records.
	mne_filter_def.h
	Lightweight filter specification (kind, cutoff frequencies, length).
	mne_forward_solution.cpp
	Implementation of MNELIB::MNEForwardSolution.
	mne_forward_solution.h
	Forward solution (gain matrix mapping source dipoles to sensor measurements).
	mne_global.cpp
	MNELIB build-info helper implementation.
	mne_global.h
	MNELIB shared-library export/import macros and library build metadata.
	mne_hemisphere.cpp
	Implementation of MNELIB::MNEHemisphere.
	mne_hemisphere.h
	Per-hemisphere cortical surface bundle with decimation, patch info and rendering buffers.
	mne_icp.cpp
	Implementation of the ICP rigid alignment in MNELIB::MNEIcp.
	mne_icp.h
	Iterative Closest Point alignment between MEG digitiser points and an MRI head surface.
	mne_inverse_operator.cpp
	Implementation of MNELIB::MNEInverseOperator.
	mne_inverse_operator.h
	Pre-computed inverse operator (whitened SVD of the forward model) for MNE/dSPM/sLORETA.
	mne_layout.h
	2D sensor layout (channel name -> [x,y,w,h]) used by topographic plots.
	mne_layout_port.h
	Port-level companion structure to MNELIB::MNELayout for split-channel sensors.
	mne_meas_data.cpp
	Implementation of MNELIB::MNEMeasData.
	mne_meas_data.h
	Legacy MNE-C measurement-data container assembling raw/evoked sets and their projection state.
	mne_meas_data_set.cpp
	Implementation of MNELIB::MNEMeasDataSet.
	mne_meas_data_set.h
	One condition / averaging slice within a legacy MNELIB::MNEMeasData.
	mne_mgh_tag.cpp
	Implementation of MNELIB::MNEMghTag.
	mne_mgh_tag.h
	Single FreeSurfer MGH/MGZ tag (key, length, opaque payload).
	mne_mgh_tag_group.cpp
	Implementation of MNELIB::MNEMghTagGroup.
	mne_mgh_tag_group.h
	Ordered group of MNELIB::MNEMghTag entries appended to an MGH/MGZ file.
	mne_mne_data.cpp
	Implementation of MNELIB::MNEMneData.
	mne_mne_data.h
	Container for the working tensors of an MNE inverse computation (whitened residuals, source-time matrices).
	mne_morph_map.cpp
	Implementation of MNELIB::MNEMorphMap.
	mne_morph_map.h
	Sparse linear operator that morphs a source estimate between two subjects.
	mne_msh_color_scale_def.cpp
	Implementation of MNELIB::MNEMshColorScaleDef.
	mne_msh_color_scale_def.h
	Mesh-display colour scale definition (FreeSurfer mri_glm style).
	mne_msh_display_surface.cpp
	Implementation of MNELIB::MNEMshDisplaySurface.
	mne_msh_display_surface.h
	One renderable surface (cortex / pial / inflated / BEM) inside an MSH display set.
	mne_msh_display_surface_set.cpp
	Implementation of MNELIB::MNEMshDisplaySurfaceSet.
	mne_msh_display_surface_set.h
	Set of MNELIB::MNEMshDisplaySurface objects sharing a camera, lights and selection.
	mne_msh_eyes.cpp
	Implementation of MNELIB::MNEMshEyes.
	mne_msh_eyes.h
	Mesh-viewer camera state (position, focal point, up vector, field of view).
	mne_msh_light.cpp
	Implementation of MNELIB::MNEMshLight.
	mne_msh_light.h
	Single directional / positional light source for the mesh viewer.
	mne_msh_light_set.cpp
	Implementation of MNELIB::MNEMshLightSet.
	mne_msh_light_set.h
	Collection of MNELIB::MNEMshLight sources making up the viewer lighting rig.
	mne_msh_picked.cpp
	Implementation of MNELIB::MNEMshPicked.
	mne_msh_picked.h
	Picked vertices / triangles on a mesh display surface.
	mne_named_matrix.cpp
	Implementation of MNELIB::MNENamedMatrix.
	mne_named_matrix.h
	Row/column-labelled dense matrix used wherever FIFF stores per-channel data.
	mne_named_vector.cpp
	Implementation of MNELIB::MNENamedVector.
	mne_named_vector.h
	Named one-dimensional counterpart of MNELIB::MNENamedMatrix.
	mne_nearest.cpp
	Implementation of MNELIB::MNENearest.
	mne_nearest.h
	Per-source-space-vertex nearest-cortex-vertex mapping.
	mne_patch_info.cpp
	Implementation of MNELIB::MNEPatchInfo.
	mne_patch_info.h
	Patch information (cluster of cortex vertices around each decimated source) used by orientation priors.
	mne_process_description.h
	Plain-old-data record describing one MNE-C .ave / .cov processing entry.
	mne_proj_data.cpp
	Implementation of MNELIB::MNEProjData.
	mne_proj_data.h
	Legacy MNE-C aggregator for SSP projections plus the channel list they apply to.
	mne_proj_item.cpp
	Implementation of MNELIB::MNEProjItem.
	mne_proj_item.h
	Single SSP projection vector with kind/active flag and channel labels.
	mne_proj_op.cpp
	Implementation of MNELIB::MNEProjOp.
	mne_proj_op.h
	Composite SSP projection operator P = I - U U^T assembled from a list of MNELIB::MNEProjItem.
	mne_project_to_surface.cpp
	Implementation of MNELIB::MNEProjectToSurface.
	mne_project_to_surface.h
	Geometric projection of a 3D point onto the closest cortex triangle.
	mne_raw_buf_def.cpp
	Implementation of MNELIB::MNERawBufDef.
	mne_raw_buf_def.h
	Descriptor of a single FIFF_DATA_BUFFER block (file offset, sample range, type).
	mne_raw_data.cpp
	Implementation of MNELIB::MNERawData.
	mne_raw_data.h
	Legacy MNE-C raw-recording container with per-file buffer descriptors.
	mne_raw_info.cpp
	Implementation of MNELIB::MNERawInfo.
	mne_raw_info.h
	Subset of FIFF measurement info needed by the legacy raw-data path.
	mne_source_space.cpp
	Implementation of MNELIB::MNESourceSpace.
	mne_source_space.h
	Single-hemisphere source space (cortical surface or volume grid) loaded from FIFF.
	mne_source_spaces.cpp
	Implementation of MNELIB::MNESourceSpaces.
	mne_source_spaces.h
	Container pairing the left and right cortical source spaces of a subject.
	mne_sparse_named_matrix.h
	Sparse variant of MNELIB::MNENamedMatrix backed by an Eigen SparseMatrix.
	mne_sss_data.cpp
	Implementation of MNELIB::MNESssData.
	mne_sss_data.h
	Signal Space Separation (Maxwell filter) basis metadata stored alongside MEG raw data.
	mne_surface.cpp
	Implementation of MNELIB::MNESurface.
	mne_surface.h
	Lightweight triangulated surface (vertices, triangles, normals) used by surface-based routines.
	mne_surface_or_volume.cpp
	Implementation of MNELIB::MNESurfaceOrVolume.
	mne_surface_or_volume.h
	Discriminated geometry container that can represent either a triangulated surface or a discrete/volume source space.
	mne_surface_patch.cpp
	Implementation of MNELIB::MNESurfacePatch.
	mne_surface_patch.h
	Local surface patch (neighbours-of-neighbours) used by patch-based source priors.
	mne_triangle.cpp
	Implementation of MNELIB::MNETriangle.
	mne_triangle.h
	Triangle descriptor with cached centroid, area and normal vectors.
	mne_types.h
	Legacy MNE-C constants and shared typedefs used across MNELIB structures.
	mne_vol_geom.cpp
	Implementation of MNELIB::MNEVolGeom.
	mne_vol_geom.h
	FreeSurfer volume geometry header carried by surface and tag streams.