This defines a source space or a surface. More...

#include <mne_surface_or_volume.h>

Public Types
typedef QSharedPointer< MneSurfaceOrVolume >	SPtr
typedef QSharedPointer< const MneSurfaceOrVolume >	ConstSPtr

Public Member Functions
	MneSurfaceOrVolume ()
virtual	~MneSurfaceOrVolume ()

Static Public Member Functions
static double	solid_angle (float from, MNELIB::MneTriangle tri)
static double	sum_solids (float from, MneSurfaceOld surf)
static int	mne_filter_source_spaces (MneSurfaceOld surf, float limit, FIFFLIB::FiffCoordTransOld mri_head_t, MneSourceSpaceOld *spaces, int nspace, FILE filtered)
static int	mne_add_patch_stats (MneSourceSpaceOld *s)
static void	rearrange_source_space (MneSourceSpaceOld *s)
static void *	filter_source_space (void *arg)
static int	filter_source_spaces (float limit, char bemfile, FIFFLIB::FiffCoordTransOld mri_head_t, MneSourceSpaceOld *spaces, int nspace, FILE filtered, bool use_threads)
static MneSourceSpaceOld *	make_volume_source_space (MneSurfaceOld *surf, float grid, float exclude, float mindist)
static MneSourceSpaceOld *	mne_new_source_space (int np)
static MneSurfaceOld *	read_bem_surface (const QString &name, int which, int add_geometry, float *sigmap)
static MneSurfaceOld *	mne_read_bem_surface2 (char name, int which, int add_geometry, float sigmap)
static MneSurfaceOld *	read_bem_surface (const QString &name, int which, int add_geometry, float *sigmap, bool check_too_many_neighbors)
static void	mne_triangle_coords (float r, MneSurfaceOld s, int tri, float x, float y, float *z)
static int	nearest_triangle_point (float r, MneSurfaceOld s, void user, int tri, float x, float y, float z)
static void	project_to_triangle (MneSurfaceOld s, int tri, float p, float q, float r)
static int	mne_nearest_triangle_point (float r, MneSurfaceOld s, int tri, float x, float y, float *z)
static int	mne_project_to_surface (MneSurfaceOld s, void proj_data, float r, int project_it, float distp)
static void	mne_project_to_triangle (MneSurfaceOld s, int best, float r, float *proj)
static void	mne_find_closest_on_surface_approx (MneSurfaceOld s, float r, int np, int nearest, float *dist, int nstep)
static void	decide_search_restriction (MneSurfaceOld s, MneProjData p, int approx_best, int nstep, float *r)
static void	activate_neighbors (MneSurfaceOld s, int start, int act, int nstep)
static int	mne_read_source_spaces (const QString &name, MneSourceSpaceOld **spacesp, int nspacep)
static void	mne_source_space_update_inuse (MneSourceSpaceOld s, int new_inuse)
static int	mne_is_left_hemi_source_space (MneSourceSpaceOld *s)
static int	mne_transform_source_space (MneSourceSpaceOld ss, FIFFLIB::FiffCoordTransOld t)
static int	mne_transform_source_spaces_to (int coord_frame, FIFFLIB::FiffCoordTransOld t, MneSourceSpaceOld *spaces, int nspace)
static void	enable_all_sources (MneSourceSpaceOld *s)
static int	restrict_sources_to_labels (MneSourceSpaceOld **spaces, int nspace, const QStringList &labels, int nlabel)
static int	mne_find_sources_in_label (char label, MneSourceSpaceOld s, int off, int *selp, int nselp)
static int	mne_read_label (const QString &label, char commentp, int selp, int *nselp)
static int	mne_write_label (char label, char comment, int sel, int nsel, float *rr)
static int	mne_label_area (char label, MneSourceSpaceOld s, float *areap)
static void	mne_add_triangle_data (MneSourceSpaceOld *s)
static void	mne_compute_cm (float *rr, int np, float cm)
static void	mne_compute_surface_cm (MneSurfaceOld *s)
static void	calculate_vertex_distances (MneSourceSpaceOld *s)
static int	mne_add_vertex_normals (MneSourceSpaceOld *s)
static int	add_geometry_info (MneSourceSpaceOld s, int do_normals, int border, int check_too_many_neighbors)
static int	mne_source_space_add_geometry_info (MneSourceSpaceOld *s, int do_normals)
static int	mne_source_space_add_geometry_info2 (MneSourceSpaceOld *s, int do_normals)
static int	align_fiducials (FIFFLIB::FiffDigitizerData head_dig, FIFFLIB::FiffDigitizerData mri_dig, MneMshDisplaySurface head_surf, int niter, int scale_head, float omit_dist, float scales)
static void	get_head_scale (FIFFLIB::FiffDigitizerData dig, float mri_fid, MneMshDisplaySurface head_surf, float *scales)
static int	discard_outlier_digitizer_points (FIFFLIB::FiffDigitizerData d, MneMshDisplaySurface head, float maxdist)
static void	calculate_digitizer_distances (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head, int do_all, int do_approx)
static int	iterate_alignment_once (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head, int nasion_weight, float *nasion_mri, int last_step)
static float	rms_digitizer_distance (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head)
static void	scale_display_surface (MneMshDisplaySurface surf, float scales)
static void	add_uniform_curv (MneSurfaceOld *s)
static char *	mne_compose_surf_name (const char subj, const char name, const char *prefix)
static MneSourceSpaceOld *	mne_load_surface (char surf_file, char curv_file)
static MneSourceSpaceOld *	mne_load_surface_geom (char surf_file, char curv_file, int add_geometry, int check_too_many_neighbors)
static int	mne_read_triangle_file (char fname, int nvertp, int ntrip, float vertp, int trip, void *tagsp)
static int	mne_read_curvature_file (char fname, float curvsp, int ncurvp)
static int	check_quad (float **rr)
static int	check_vertex (int no, int maxno)
static MneVolGeom *	mne_get_volume_geom_from_tag (void *tagsp)
static MneVolGeom *	mne_dup_vol_geom (MneVolGeom *g)
static int	mne_read_mgh_tags (FILE fp, void *tagsp)
static int	read_next_tag (FILE fp, int tagp, long long lenp, unsigned char *datap)
static int	read_tag_data (FILE fp, int tag, long long nbytes, unsigned char val, long long nbytesp)
static MneMghTagGroup *	mne_add_mgh_tag_to_group (MneMghTagGroup g, int tag, long long len, unsigned char data)
static MneVolGeom *	read_vol_geom (FILE *fp)
static int	mne_read_int3 (FILE in, int ival)
static int	mne_read_int (FILE in, qint32 ival)
static int	mne_read_int2 (FILE in, int ival)
static int	mne_read_float (FILE in, float fval)
static int	mne_read_long (FILE in, long long lval)
static char *	mne_strdup (const char *s)

Public Attributes
int	type
QString	subject
int	id
int	coord_frame
MneVolGeom *	vol_geom
void *	mgh_tags
int	np
float **	rr
float **	nn
float	cm [3]
int *	inuse
int *	vertno
int	nuse
int **	neighbor_vert
int *	nneighbor_vert
float **	vert_dist
int	ntri
MneTriangle *	tris
int **	itris
float	tot_area
int	nuse_tri
MneTriangle *	use_tris
int **	use_itris
int **	neighbor_tri
int *	nneighbor_tri
MneNearest *	nearest
MnePatchInfo **	patches
int	npatch
FIFFLIB::FiffSparseMatrix *	dist
float	dist_limit
float *	curv
float *	val
FIFFLIB::FiffCoordTransOld *	voxel_surf_RAS_t
int	vol_dims [3]
float	voxel_size [3]
FIFFLIB::FiffSparseMatrix *	interpolator
QString	MRI_volume
FIFFLIB::FiffCoordTransOld *	MRI_voxel_surf_RAS_t
FIFFLIB::FiffCoordTransOld *	MRI_surf_RAS_RAS_t
int	MRI_vol_dims [3]
void *	user_data
mneUserFreeFunc	user_data_free

Detailed Description

This defines a source space or a surface.

Implements MNE Surface or Volume (Replaces *mneSurfaceOrVolume,mneSurfaceOrVolumeRec; struct of MNE-C mne_types.h).

Definition at line 113 of file mne_surface_or_volume.h.

Inheritance diagram for MNELIB::MneSurfaceOrVolume:

Member Typedef Documentation

◆ ConstSPtr

typedef QSharedPointer<const MneSurfaceOrVolume> MNELIB::MneSurfaceOrVolume::ConstSPtr

Const shared pointer type for MneSurfaceOrVolume.

Definition at line 117 of file mne_surface_or_volume.h.

◆ SPtr

typedef QSharedPointer<MneSurfaceOrVolume> MNELIB::MneSurfaceOrVolume::SPtr

Shared pointer type for MneSurfaceOrVolume.

Definition at line 116 of file mne_surface_or_volume.h.

Constructor & Destructor Documentation

◆ MneSurfaceOrVolume()

MneSurfaceOrVolume::MneSurfaceOrVolume ( )

Constructs the MNE Surface or Volume

Definition at line 340 of file mne_surface_or_volume.cpp.

◆ ~MneSurfaceOrVolume()

MneSurfaceOrVolume::~MneSurfaceOrVolume ( )

virtual

Destroys the MNE Surface or Volume description Refactored: mne_free_source_space (mne_source_space.c)

Definition at line 346 of file mne_surface_or_volume.cpp.

Member Function Documentation

◆ activate_neighbors()

void MneSurfaceOrVolume::activate_neighbors	(	MneSurfaceOld *	s,
		int	start,
		int *	act,
		int	nstep )

static

Definition at line 1628 of file mne_surface_or_volume.cpp.

◆ add_geometry_info()

int MneSurfaceOrVolume::add_geometry_info	(	MneSourceSpaceOld *	s,
		int	do_normals,
		int *	border,
		int	check_too_many_neighbors )

static

Definition at line 2562 of file mne_surface_or_volume.cpp.

◆ add_uniform_curv()

void MneSurfaceOrVolume::add_uniform_curv ( MneSurfaceOld * s )

static

Definition at line 3265 of file mne_surface_or_volume.cpp.

◆ align_fiducials()

int MneSurfaceOrVolume::align_fiducials	(	FIFFLIB::FiffDigitizerData *	head_dig,
		FIFFLIB::FiffDigitizerData *	mri_dig,
		MneMshDisplaySurface *	head_surf,
		int	niter,
		int	scale_head,
		float	omit_dist,
		float *	scales )

static

Definition at line 2845 of file mne_surface_or_volume.cpp.

◆ calculate_digitizer_distances()

void MneSurfaceOrVolume::calculate_digitizer_distances	(	FIFFLIB::FiffDigitizerData *	dig,
		MneMshDisplaySurface *	head,
		int	do_all,
		int	do_approx )

static

Definition at line 3047 of file mne_surface_or_volume.cpp.

◆ calculate_vertex_distances()

void MneSurfaceOrVolume::calculate_vertex_distances ( MneSourceSpaceOld * s )

static

Definition at line 2482 of file mne_surface_or_volume.cpp.

◆ check_quad()

int MneSurfaceOrVolume::check_quad ( float ** rr )

static

Definition at line 3720 of file mne_surface_or_volume.cpp.

◆ check_vertex()

int MneSurfaceOrVolume::check_vertex	(	int	no,
		int	maxno )

static

Definition at line 3742 of file mne_surface_or_volume.cpp.

◆ decide_search_restriction()

void MneSurfaceOrVolume::decide_search_restriction	(	MneSurfaceOld *	s,
		MneProjData *	p,
		int	approx_best,
		int	nstep,
		float *	r )

static

Definition at line 1559 of file mne_surface_or_volume.cpp.

◆ discard_outlier_digitizer_points()

int MneSurfaceOrVolume::discard_outlier_digitizer_points	(	FIFFLIB::FiffDigitizerData *	d,
		MneMshDisplaySurface *	head,
		float	maxdist )

static

Definition at line 3015 of file mne_surface_or_volume.cpp.

◆ enable_all_sources()

void MneSurfaceOrVolume::enable_all_sources ( MneSourceSpaceOld * s )

static

Definition at line 2099 of file mne_surface_or_volume.cpp.

◆ filter_source_space()

void * MneSurfaceOrVolume::filter_source_space ( void * arg )

static

Definition at line 652 of file mne_surface_or_volume.cpp.

◆ filter_source_spaces()

int MneSurfaceOrVolume::filter_source_spaces	(	float	limit,
		char *	bemfile,
		FIFFLIB::FiffCoordTransOld *	mri_head_t,
		MneSourceSpaceOld **	spaces,
		int	nspace,
		FILE *	filtered,
		bool	use_threads )

static

Definition at line 720 of file mne_surface_or_volume.cpp.

◆ get_head_scale()

void MneSurfaceOrVolume::get_head_scale	(	FIFFLIB::FiffDigitizerData *	dig,
		float **	mri_fid,
		MneMshDisplaySurface *	head_surf,
		float *	scales )

static

Definition at line 2949 of file mne_surface_or_volume.cpp.

◆ iterate_alignment_once()

int MneSurfaceOrVolume::iterate_alignment_once	(	FIFFLIB::FiffDigitizerData *	dig,
		MneMshDisplaySurface *	head,
		int	nasion_weight,
		float *	nasion_mri,
		int	last_step )

static

Definition at line 3136 of file mne_surface_or_volume.cpp.

◆ make_volume_source_space()

MneSourceSpaceOld * MneSurfaceOrVolume::make_volume_source_space	(	MneSurfaceOld *	surf,
		float	grid,
		float	exclude,
		float	mindist )

static

Definition at line 803 of file mne_surface_or_volume.cpp.

◆ mne_add_mgh_tag_to_group()

MneMghTagGroup * MneSurfaceOrVolume::mne_add_mgh_tag_to_group	(	MneMghTagGroup *	g,
		int	tag,
		long long	len,
		unsigned char *	data )

static

Definition at line 3898 of file mne_surface_or_volume.cpp.

◆ mne_add_patch_stats()

int MneSurfaceOrVolume::mne_add_patch_stats ( MneSourceSpaceOld * s )

static

Definition at line 535 of file mne_surface_or_volume.cpp.

◆ mne_add_triangle_data()

void MneSurfaceOrVolume::mne_add_triangle_data ( MneSourceSpaceOld * s )

static

Definition at line 2391 of file mne_surface_or_volume.cpp.

◆ mne_add_vertex_normals()

int MneSurfaceOrVolume::mne_add_vertex_normals ( MneSourceSpaceOld * s )

static

Definition at line 2518 of file mne_surface_or_volume.cpp.

◆ mne_compose_surf_name()

char * MneSurfaceOrVolume::mne_compose_surf_name	(	const char *	subj,
		const char *	name,
		const char *	prefix )

static

Definition at line 3280 of file mne_surface_or_volume.cpp.

◆ mne_compute_cm()

void MneSurfaceOrVolume::mne_compute_cm	(	float **	rr,
		int	np,
		float *	cm )

static

Definition at line 2446 of file mne_surface_or_volume.cpp.

◆ mne_compute_surface_cm()

void MneSurfaceOrVolume::mne_compute_surface_cm ( MneSurfaceOld * s )

static

Definition at line 2468 of file mne_surface_or_volume.cpp.

◆ mne_dup_vol_geom()

MneVolGeom * MneSurfaceOrVolume::mne_dup_vol_geom ( MneVolGeom * g )

static

Definition at line 3775 of file mne_surface_or_volume.cpp.

◆ mne_filter_source_spaces()

int MneSurfaceOrVolume::mne_filter_source_spaces	(	MneSurfaceOld *	surf,
		float	limit,
		FIFFLIB::FiffCoordTransOld *	mri_head_t,
		MneSourceSpaceOld **	spaces,
		int	nspace,
		FILE *	filtered )

static

Definition at line 443 of file mne_surface_or_volume.cpp.

◆ mne_find_closest_on_surface_approx()

void MneSurfaceOrVolume::mne_find_closest_on_surface_approx	(	MneSurfaceOld *	s,
		float **	r,
		int	np,
		int *	nearest,
		float *	dist,
		int	nstep )

static

Definition at line 1529 of file mne_surface_or_volume.cpp.

◆ mne_find_sources_in_label()

int MneSurfaceOrVolume::mne_find_sources_in_label	(	char *	label,
		MneSourceSpaceOld *	s,
		int	off,
		int **	selp,
		int *	nselp )

static

Definition at line 2194 of file mne_surface_or_volume.cpp.

◆ mne_get_volume_geom_from_tag()

MneVolGeom * MneSurfaceOrVolume::mne_get_volume_geom_from_tag ( void * tagsp )

static

Definition at line 3754 of file mne_surface_or_volume.cpp.

◆ mne_is_left_hemi_source_space()

int MneSurfaceOrVolume::mne_is_left_hemi_source_space ( MneSourceSpaceOld * s )

static

Definition at line 2012 of file mne_surface_or_volume.cpp.

◆ mne_label_area()

int MneSurfaceOrVolume::mne_label_area	(	char *	label,
		MneSourceSpaceOld *	s,
		float *	areap )

static

Definition at line 2804 of file mne_surface_or_volume.cpp.

◆ mne_load_surface()

MneSourceSpaceOld * MneSurfaceOrVolume::mne_load_surface	(	char *	surf_file,
		char *	curv_file )

static

Definition at line 3314 of file mne_surface_or_volume.cpp.

◆ mne_load_surface_geom()

MneSourceSpaceOld * MneSurfaceOrVolume::mne_load_surface_geom	(	char *	surf_file,
		char *	curv_file,
		int	add_geometry,
		int	check_too_many_neighbors )

static

Definition at line 3322 of file mne_surface_or_volume.cpp.

◆ mne_nearest_triangle_point()

int MneSurfaceOrVolume::mne_nearest_triangle_point	(	float *	r,
		MneSurfaceOld *	s,
		int	tri,
		float *	x,
		float *	y,
		float *	z )

static

Definition at line 1469 of file mne_surface_or_volume.cpp.

◆ mne_new_source_space()

MneSourceSpaceOld * MneSurfaceOrVolume::mne_new_source_space ( int np )

static

Definition at line 1064 of file mne_surface_or_volume.cpp.

◆ mne_project_to_surface()

int MneSurfaceOrVolume::mne_project_to_surface	(	MneSurfaceOld *	s,
		void *	proj_data,
		float *	r,
		int	project_it,
		float *	distp )

static

Definition at line 1479 of file mne_surface_or_volume.cpp.

◆ mne_project_to_triangle()

void MneSurfaceOrVolume::mne_project_to_triangle	(	MneSurfaceOld *	s,
		int	best,
		float *	r,
		float *	proj )

static

Definition at line 1511 of file mne_surface_or_volume.cpp.

◆ mne_read_bem_surface2()

MneSurfaceOld * MneSurfaceOrVolume::mne_read_bem_surface2	(	char *	name,
		int	which,
		int	add_geometry,
		float *	sigmap )

static

Definition at line 1142 of file mne_surface_or_volume.cpp.

◆ mne_read_curvature_file()

int MneSurfaceOrVolume::mne_read_curvature_file	(	char *	fname,
		float **	curvsp,
		int *	ncurvp )

static

Definition at line 3624 of file mne_surface_or_volume.cpp.

◆ mne_read_float()

int MneSurfaceOrVolume::mne_read_float	(	FILE *	in,
		float *	fval )

static

Definition at line 4063 of file mne_surface_or_volume.cpp.

◆ mne_read_int()

int MneSurfaceOrVolume::mne_read_int	(	FILE *	in,
		qint32 *	ival )

static

Definition at line 4025 of file mne_surface_or_volume.cpp.

◆ mne_read_int2()

int MneSurfaceOrVolume::mne_read_int2	(	FILE *	in,
		int *	ival )

static

Definition at line 4044 of file mne_surface_or_volume.cpp.

◆ mne_read_int3()

int MneSurfaceOrVolume::mne_read_int3	(	FILE *	in,
		int *	ival )

static

Definition at line 4004 of file mne_surface_or_volume.cpp.

◆ mne_read_label()

int MneSurfaceOrVolume::mne_read_label	(	const QString &	label,
		char **	commentp,
		int **	selp,
		int *	nselp )

static

Definition at line 2266 of file mne_surface_or_volume.cpp.

◆ mne_read_long()

int MneSurfaceOrVolume::mne_read_long	(	FILE *	in,
		long long *	lval )

static

Definition at line 4082 of file mne_surface_or_volume.cpp.

◆ mne_read_mgh_tags()

int MneSurfaceOrVolume::mne_read_mgh_tags	(	FILE *	fp,
		void **	tagsp )

static

Definition at line 3788 of file mne_surface_or_volume.cpp.

◆ mne_read_source_spaces()

int MneSurfaceOrVolume::mne_read_source_spaces	(	const QString &	name,
		MneSourceSpaceOld ***	spacesp,
		int *	nspacep )

static

Definition at line 1648 of file mne_surface_or_volume.cpp.

◆ mne_read_triangle_file()

int MneSurfaceOrVolume::mne_read_triangle_file	(	char *	fname,
		int *	nvertp,
		int *	ntrip,
		float ***	vertp,
		int ***	trip,
		void **	tagsp )

static

Definition at line 3405 of file mne_surface_or_volume.cpp.

◆ mne_source_space_add_geometry_info()

int MneSurfaceOrVolume::mne_source_space_add_geometry_info	(	MneSourceSpaceOld *	s,
		int	do_normals )

static

Definition at line 2789 of file mne_surface_or_volume.cpp.

◆ mne_source_space_add_geometry_info2()

int MneSurfaceOrVolume::mne_source_space_add_geometry_info2	(	MneSourceSpaceOld *	s,
		int	do_normals )

static

Definition at line 2796 of file mne_surface_or_volume.cpp.

◆ mne_source_space_update_inuse()

void MneSurfaceOrVolume::mne_source_space_update_inuse	(	MneSourceSpaceOld *	s,
		int *	new_inuse )

static

Definition at line 1980 of file mne_surface_or_volume.cpp.

◆ mne_strdup()

char * MneSurfaceOrVolume::mne_strdup ( const char * s )

static

Definition at line 4101 of file mne_surface_or_volume.cpp.

◆ mne_transform_source_space()

int MneSurfaceOrVolume::mne_transform_source_space	(	MneSourceSpaceOld *	ss,
		FIFFLIB::FiffCoordTransOld *	t )

static

Definition at line 2030 of file mne_surface_or_volume.cpp.

◆ mne_transform_source_spaces_to()

int MneSurfaceOrVolume::mne_transform_source_spaces_to	(	int	coord_frame,
		FIFFLIB::FiffCoordTransOld *	t,
		MneSourceSpaceOld **	spaces,
		int	nspace )

static

Definition at line 2058 of file mne_surface_or_volume.cpp.

◆ mne_triangle_coords()

void MneSurfaceOrVolume::mne_triangle_coords	(	float *	r,
		MneSurfaceOld *	s,
		int	tri,
		float *	x,
		float *	y,
		float *	z )

static

Definition at line 1309 of file mne_surface_or_volume.cpp.

◆ mne_write_label()

int MneSurfaceOrVolume::mne_write_label	(	char *	label,
		char *	comment,
		int *	sel,
		int	nsel,
		float **	rr )

static

Definition at line 2347 of file mne_surface_or_volume.cpp.

◆ nearest_triangle_point()

int MneSurfaceOrVolume::nearest_triangle_point	(	float *	r,
		MneSurfaceOld *	s,
		void *	user,
		int	tri,
		float *	x,
		float *	y,
		float *	z )

static

Definition at line 1340 of file mne_surface_or_volume.cpp.

◆ project_to_triangle()

void MneSurfaceOrVolume::project_to_triangle	(	MneSurfaceOld *	s,
		int	tri,
		float	p,
		float	q,
		float *	r )

static

Definition at line 1454 of file mne_surface_or_volume.cpp.

◆ read_bem_surface() [1/2]

MneSurfaceOld * MneSurfaceOrVolume::read_bem_surface	(	const QString &	name,
		int	which,
		int	add_geometry,
		float *	sigmap )

static

Definition at line 1135 of file mne_surface_or_volume.cpp.

◆ read_bem_surface() [2/2]

MneSurfaceOld * MneSurfaceOrVolume::read_bem_surface	(	const QString &	name,
		int	which,
		int	add_geometry,
		float *	sigmap,
		bool	check_too_many_neighbors )

static

Definition at line 1149 of file mne_surface_or_volume.cpp.

◆ read_next_tag()

int MneSurfaceOrVolume::read_next_tag	(	FILE *	fp,
		int *	tagp,
		long long *	lenp,
		unsigned char **	datap )

static

Definition at line 3811 of file mne_surface_or_volume.cpp.

◆ read_tag_data()

int MneSurfaceOrVolume::read_tag_data	(	FILE *	fp,
		int	tag,
		long long	nbytes,
		unsigned char **	val,
		long long *	nbytesp )

static

Definition at line 3852 of file mne_surface_or_volume.cpp.

◆ read_vol_geom()

MneVolGeom * MneSurfaceOrVolume::read_vol_geom ( FILE * fp )

static

Definition at line 3915 of file mne_surface_or_volume.cpp.

◆ rearrange_source_space()

void MneSurfaceOrVolume::rearrange_source_space ( MneSourceSpaceOld * s )

static

Definition at line 627 of file mne_surface_or_volume.cpp.

◆ restrict_sources_to_labels()

int MneSurfaceOrVolume::restrict_sources_to_labels	(	MneSourceSpaceOld **	spaces,
		int	nspace,
		const QStringList &	labels,
		int	nlabel )

static

Definition at line 2113 of file mne_surface_or_volume.cpp.

◆ rms_digitizer_distance()

float MneSurfaceOrVolume::rms_digitizer_distance	(	FIFFLIB::FiffDigitizerData *	dig,
		MneMshDisplaySurface *	head )

static

Definition at line 3223 of file mne_surface_or_volume.cpp.

◆ scale_display_surface()

void MneSurfaceOrVolume::scale_display_surface	(	MneMshDisplaySurface *	surf,
		float *	scales )

static

Definition at line 3242 of file mne_surface_or_volume.cpp.

◆ solid_angle()

double MneSurfaceOrVolume::solid_angle	(	float *	from,
		MNELIB::MneTriangle *	tri )

static

Definition at line 403 of file mne_surface_or_volume.cpp.

◆ sum_solids()

double MneSurfaceOrVolume::sum_solids	(	float *	from,
		MneSurfaceOld *	surf )

static

Definition at line 430 of file mne_surface_or_volume.cpp.

Member Data Documentation

◆ cm

float MNELIB::MneSurfaceOrVolume::cm[3]

Definition at line 439 of file mne_surface_or_volume.h.

◆ coord_frame

int MNELIB::MneSurfaceOrVolume::coord_frame

Definition at line 427 of file mne_surface_or_volume.h.

◆ curv

float* MNELIB::MneSurfaceOrVolume::curv

Definition at line 470 of file mne_surface_or_volume.h.

◆ dist

FIFFLIB::FiffSparseMatrix* MNELIB::MneSurfaceOrVolume::dist

Definition at line 467 of file mne_surface_or_volume.h.

◆ dist_limit

float MNELIB::MneSurfaceOrVolume::dist_limit

Definition at line 468 of file mne_surface_or_volume.h.

◆ id

int MNELIB::MneSurfaceOrVolume::id

Definition at line 426 of file mne_surface_or_volume.h.

◆ interpolator

FIFFLIB::FiffSparseMatrix* MNELIB::MneSurfaceOrVolume::interpolator

Definition at line 478 of file mne_surface_or_volume.h.

◆ inuse

int* MNELIB::MneSurfaceOrVolume::inuse

Definition at line 441 of file mne_surface_or_volume.h.

◆ itris

int** MNELIB::MneSurfaceOrVolume::itris

Definition at line 453 of file mne_surface_or_volume.h.

◆ mgh_tags

void* MNELIB::MneSurfaceOrVolume::mgh_tags

Definition at line 432 of file mne_surface_or_volume.h.

◆ MRI_surf_RAS_RAS_t

FIFFLIB::FiffCoordTransOld* MNELIB::MneSurfaceOrVolume::MRI_surf_RAS_RAS_t

Definition at line 481 of file mne_surface_or_volume.h.

◆ MRI_vol_dims

int MNELIB::MneSurfaceOrVolume::MRI_vol_dims[3]

Definition at line 482 of file mne_surface_or_volume.h.

◆ MRI_volume

QString MNELIB::MneSurfaceOrVolume::MRI_volume

Definition at line 479 of file mne_surface_or_volume.h.

◆ MRI_voxel_surf_RAS_t

FIFFLIB::FiffCoordTransOld* MNELIB::MneSurfaceOrVolume::MRI_voxel_surf_RAS_t

Definition at line 480 of file mne_surface_or_volume.h.

◆ nearest

MneNearest* MNELIB::MneSurfaceOrVolume::nearest

Definition at line 463 of file mne_surface_or_volume.h.

◆ neighbor_tri

int** MNELIB::MneSurfaceOrVolume::neighbor_tri

Definition at line 460 of file mne_surface_or_volume.h.

◆ neighbor_vert

int** MNELIB::MneSurfaceOrVolume::neighbor_vert

Definition at line 445 of file mne_surface_or_volume.h.

◆ nn

float** MNELIB::MneSurfaceOrVolume::nn

Definition at line 438 of file mne_surface_or_volume.h.

◆ nneighbor_tri

int* MNELIB::MneSurfaceOrVolume::nneighbor_tri

Definition at line 461 of file mne_surface_or_volume.h.

◆ nneighbor_vert

int* MNELIB::MneSurfaceOrVolume::nneighbor_vert

Definition at line 446 of file mne_surface_or_volume.h.

◆ np

int MNELIB::MneSurfaceOrVolume::np

Definition at line 436 of file mne_surface_or_volume.h.

◆ npatch

int MNELIB::MneSurfaceOrVolume::npatch

Definition at line 465 of file mne_surface_or_volume.h.

◆ ntri

int MNELIB::MneSurfaceOrVolume::ntri

Definition at line 451 of file mne_surface_or_volume.h.

◆ nuse

int MNELIB::MneSurfaceOrVolume::nuse

Definition at line 443 of file mne_surface_or_volume.h.

◆ nuse_tri

int MNELIB::MneSurfaceOrVolume::nuse_tri

Definition at line 456 of file mne_surface_or_volume.h.

◆ patches

MnePatchInfo* * MNELIB::MneSurfaceOrVolume::patches

Definition at line 464 of file mne_surface_or_volume.h.

◆ rr

float** MNELIB::MneSurfaceOrVolume::rr

Definition at line 437 of file mne_surface_or_volume.h.

◆ subject

QString MNELIB::MneSurfaceOrVolume::subject

Definition at line 425 of file mne_surface_or_volume.h.

◆ tot_area

float MNELIB::MneSurfaceOrVolume::tot_area

Definition at line 454 of file mne_surface_or_volume.h.

◆ tris

MneTriangle* MNELIB::MneSurfaceOrVolume::tris

Definition at line 452 of file mne_surface_or_volume.h.

◆ type

int MNELIB::MneSurfaceOrVolume::type

Definition at line 424 of file mne_surface_or_volume.h.

◆ use_itris

int** MNELIB::MneSurfaceOrVolume::use_itris

Definition at line 458 of file mne_surface_or_volume.h.

◆ use_tris

MneTriangle* MNELIB::MneSurfaceOrVolume::use_tris

Definition at line 457 of file mne_surface_or_volume.h.

◆ user_data

void* MNELIB::MneSurfaceOrVolume::user_data

Definition at line 486 of file mne_surface_or_volume.h.

◆ user_data_free

mneUserFreeFunc MNELIB::MneSurfaceOrVolume::user_data_free

Definition at line 487 of file mne_surface_or_volume.h.

◆ val

float* MNELIB::MneSurfaceOrVolume::val

Definition at line 471 of file mne_surface_or_volume.h.

◆ vert_dist

float** MNELIB::MneSurfaceOrVolume::vert_dist

Definition at line 447 of file mne_surface_or_volume.h.

◆ vertno

int* MNELIB::MneSurfaceOrVolume::vertno

Definition at line 442 of file mne_surface_or_volume.h.

◆ vol_dims

int MNELIB::MneSurfaceOrVolume::vol_dims[3]

Definition at line 476 of file mne_surface_or_volume.h.

◆ vol_geom

MneVolGeom* MNELIB::MneSurfaceOrVolume::vol_geom

Definition at line 431 of file mne_surface_or_volume.h.

◆ voxel_size

float MNELIB::MneSurfaceOrVolume::voxel_size[3]

Definition at line 477 of file mne_surface_or_volume.h.

◆ voxel_surf_RAS_t

FIFFLIB::FiffCoordTransOld* MNELIB::MneSurfaceOrVolume::voxel_surf_RAS_t

Definition at line 475 of file mne_surface_or_volume.h.

The documentation for this class was generated from the following files:

src/libraries/mne/c/mne_surface_or_volume.h
src/libraries/mne/c/mne_surface_or_volume.cpp

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Detailed Description

Member Typedef Documentation

◆ ConstSPtr

◆ SPtr

Constructor & Destructor Documentation

◆ MneSurfaceOrVolume()

◆ ~MneSurfaceOrVolume()

Member Function Documentation

◆ activate_neighbors()

◆ add_geometry_info()

◆ add_uniform_curv()

◆ align_fiducials()

◆ calculate_digitizer_distances()

◆ calculate_vertex_distances()

◆ check_quad()

◆ check_vertex()

◆ decide_search_restriction()

◆ discard_outlier_digitizer_points()

◆ enable_all_sources()

◆ filter_source_space()

◆ filter_source_spaces()

◆ get_head_scale()

◆ iterate_alignment_once()

◆ make_volume_source_space()

◆ mne_add_mgh_tag_to_group()

◆ mne_add_patch_stats()

◆ mne_add_triangle_data()

◆ mne_add_vertex_normals()

◆ mne_compose_surf_name()

◆ mne_compute_cm()

◆ mne_compute_surface_cm()

◆ mne_dup_vol_geom()

◆ mne_filter_source_spaces()

◆ mne_find_closest_on_surface_approx()

◆ mne_find_sources_in_label()

◆ mne_get_volume_geom_from_tag()

◆ mne_is_left_hemi_source_space()

◆ mne_label_area()

◆ mne_load_surface()

◆ mne_load_surface_geom()

◆ mne_nearest_triangle_point()

◆ mne_new_source_space()

◆ mne_project_to_surface()

◆ mne_project_to_triangle()

◆ mne_read_bem_surface2()

◆ mne_read_curvature_file()

◆ mne_read_float()

◆ mne_read_int()

◆ mne_read_int2()

◆ mne_read_int3()

◆ mne_read_label()

◆ mne_read_long()

◆ mne_read_mgh_tags()

◆ mne_read_source_spaces()

◆ mne_read_triangle_file()

◆ mne_source_space_add_geometry_info()

◆ mne_source_space_add_geometry_info2()

◆ mne_source_space_update_inuse()

◆ mne_strdup()

◆ mne_transform_source_space()

◆ mne_transform_source_spaces_to()

◆ mne_triangle_coords()

◆ mne_write_label()

◆ nearest_triangle_point()

◆ project_to_triangle()

◆ read_bem_surface() [1/2]

◆ read_bem_surface() [2/2]

◆ read_next_tag()

◆ read_tag_data()

◆ read_vol_geom()

◆ rearrange_source_space()

◆ restrict_sources_to_labels()

◆ rms_digitizer_distance()

◆ scale_display_surface()

◆ solid_angle()

◆ sum_solids()