This defines a surface. More...

#include <mne_surface_old.h>

Public Types
typedef QSharedPointer< MneSurfaceOld >	SPtr

typedef QSharedPointer< const MneSurfaceOld >	ConstSPtr

Public Types inherited from MNELIB::MneSurfaceOrVolume
typedef QSharedPointer< MneSurfaceOrVolume >	SPtr

typedef QSharedPointer< const MneSurfaceOrVolume >	ConstSPtr

Public Member Functions
	MneSurfaceOld ()

	~MneSurfaceOld ()

Public Member Functions inherited from MNELIB::MneSurfaceOrVolume
	MneSurfaceOrVolume ()

virtual	~MneSurfaceOrVolume ()

Additional Inherited Members
Static Public Member Functions inherited from MNELIB::MneSurfaceOrVolume
static double	solid_angle (float from, MNELIB::MneTriangle tri)

static double	sum_solids (float from, MneSurfaceOld surf)

static int	mne_filter_source_spaces (MneSurfaceOld surf, float limit, FIFFLIB::FiffCoordTransOld mri_head_t, MneSourceSpaceOld *spaces, int nspace, FILE filtered)

static int	mne_add_patch_stats (MneSourceSpaceOld *s)

static void	rearrange_source_space (MneSourceSpaceOld *s)

static void *	filter_source_space (void *arg)

static int	filter_source_spaces (float limit, char bemfile, FIFFLIB::FiffCoordTransOld mri_head_t, MneSourceSpaceOld *spaces, int nspace, FILE filtered, bool use_threads)

static MneSourceSpaceOld *	make_volume_source_space (MneSurfaceOld *surf, float grid, float exclude, float mindist)

static MneSourceSpaceOld *	mne_new_source_space (int np)

static MneSurfaceOld *	read_bem_surface (const QString &name, int which, int add_geometry, float *sigmap)

static MneSurfaceOld *	mne_read_bem_surface2 (char name, int which, int add_geometry, float sigmap)

static MneSurfaceOld *	read_bem_surface (const QString &name, int which, int add_geometry, float *sigmap, bool check_too_many_neighbors)

static void	mne_triangle_coords (float r, MneSurfaceOld s, int tri, float x, float y, float *z)

static int	nearest_triangle_point (float r, MneSurfaceOld s, void user, int tri, float x, float y, float z)

static void	project_to_triangle (MneSurfaceOld s, int tri, float p, float q, float r)

static int	mne_nearest_triangle_point (float r, MneSurfaceOld s, int tri, float x, float y, float *z)

static int	mne_project_to_surface (MneSurfaceOld s, void proj_data, float r, int project_it, float distp)

static void	mne_project_to_triangle (MneSurfaceOld s, int best, float r, float *proj)

static void	mne_find_closest_on_surface_approx (MneSurfaceOld s, float r, int np, int nearest, float *dist, int nstep)

static void	decide_search_restriction (MneSurfaceOld s, MneProjData p, int approx_best, int nstep, float *r)

static void	activate_neighbors (MneSurfaceOld s, int start, int act, int nstep)

static int	mne_read_source_spaces (const QString &name, MneSourceSpaceOld **spacesp, int nspacep)

static void	mne_source_space_update_inuse (MneSourceSpaceOld s, int new_inuse)

static int	mne_is_left_hemi_source_space (MneSourceSpaceOld *s)

static int	mne_transform_source_space (MneSourceSpaceOld ss, FIFFLIB::FiffCoordTransOld t)

static int	mne_transform_source_spaces_to (int coord_frame, FIFFLIB::FiffCoordTransOld t, MneSourceSpaceOld *spaces, int nspace)

static void	enable_all_sources (MneSourceSpaceOld *s)

static int	restrict_sources_to_labels (MneSourceSpaceOld **spaces, int nspace, const QStringList &labels, int nlabel)

static int	mne_find_sources_in_label (char label, MneSourceSpaceOld s, int off, int *selp, int nselp)

static int	mne_read_label (const QString &label, char commentp, int selp, int *nselp)

static int	mne_write_label (char label, char comment, int sel, int nsel, float *rr)

static int	mne_label_area (char label, MneSourceSpaceOld s, float *areap)

static void	mne_add_triangle_data (MneSourceSpaceOld *s)

static void	mne_compute_cm (float *rr, int np, float cm)

static void	mne_compute_surface_cm (MneSurfaceOld *s)

static void	calculate_vertex_distances (MneSourceSpaceOld *s)

static int	mne_add_vertex_normals (MneSourceSpaceOld *s)

static int	add_geometry_info (MneSourceSpaceOld s, int do_normals, int border, int check_too_many_neighbors)

static int	mne_source_space_add_geometry_info (MneSourceSpaceOld *s, int do_normals)

static int	mne_source_space_add_geometry_info2 (MneSourceSpaceOld *s, int do_normals)

static int	align_fiducials (FIFFLIB::FiffDigitizerData head_dig, FIFFLIB::FiffDigitizerData mri_dig, MneMshDisplaySurface head_surf, int niter, int scale_head, float omit_dist, float scales)

static void	get_head_scale (FIFFLIB::FiffDigitizerData dig, float mri_fid, MneMshDisplaySurface head_surf, float *scales)

static int	discard_outlier_digitizer_points (FIFFLIB::FiffDigitizerData d, MneMshDisplaySurface head, float maxdist)

static void	calculate_digitizer_distances (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head, int do_all, int do_approx)

static int	iterate_alignment_once (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head, int nasion_weight, float *nasion_mri, int last_step)

static float	rms_digitizer_distance (FIFFLIB::FiffDigitizerData dig, MneMshDisplaySurface head)

static void	scale_display_surface (MneMshDisplaySurface surf, float scales)

static void	add_uniform_curv (MneSurfaceOld *s)

static char *	mne_compose_surf_name (const char subj, const char name, const char *prefix)

static MneSourceSpaceOld *	mne_load_surface (char surf_file, char curv_file)

static MneSourceSpaceOld *	mne_load_surface_geom (char surf_file, char curv_file, int add_geometry, int check_too_many_neighbors)

static int	mne_read_triangle_file (char fname, int nvertp, int ntrip, float vertp, int trip, void *tagsp)

static int	mne_read_curvature_file (char fname, float curvsp, int ncurvp)

static int	check_quad (float **rr)

static int	check_vertex (int no, int maxno)

static MneVolGeom *	mne_get_volume_geom_from_tag (void *tagsp)

static MneVolGeom *	mne_dup_vol_geom (MneVolGeom *g)

static int	mne_read_mgh_tags (FILE fp, void *tagsp)

static int	read_next_tag (FILE fp, int tagp, long long lenp, unsigned char *datap)

static int	read_tag_data (FILE fp, int tag, long long nbytes, unsigned char val, long long nbytesp)

static MneMghTagGroup *	mne_add_mgh_tag_to_group (MneMghTagGroup g, int tag, long long len, unsigned char data)

static MneVolGeom *	read_vol_geom (FILE *fp)

static int	mne_read_int3 (FILE in, int ival)

static int	mne_read_int (FILE in, qint32 ival)

static int	mne_read_int2 (FILE in, int ival)

static int	mne_read_float (FILE in, float fval)

static int	mne_read_long (FILE in, long long lval)

static char *	mne_strdup (const char *s)

Public Attributes inherited from MNELIB::MneSurfaceOrVolume
int	type

QString	subject

int	id

int	coord_frame

MneVolGeom *	vol_geom

void *	mgh_tags

int	np

float **	rr

float **	nn

float	cm [3]

int *	inuse

int *	vertno

int	nuse

int **	neighbor_vert

int *	nneighbor_vert

float **	vert_dist

int	ntri

MneTriangle *	tris

int **	itris

float	tot_area

int	nuse_tri

MneTriangle *	use_tris

int **	use_itris

int **	neighbor_tri

int *	nneighbor_tri

MneNearest *	nearest

MnePatchInfo **	patches

int	npatch

FIFFLIB::FiffSparseMatrix *	dist

float	dist_limit

float *	curv

float *	val

FIFFLIB::FiffCoordTransOld *	voxel_surf_RAS_t

int	vol_dims [3]

float	voxel_size [3]

FIFFLIB::FiffSparseMatrix *	interpolator

QString	MRI_volume

FIFFLIB::FiffCoordTransOld *	MRI_voxel_surf_RAS_t

FIFFLIB::FiffCoordTransOld *	MRI_surf_RAS_RAS_t

int	MRI_vol_dims [3]

void *	user_data

mneUserFreeFunc	user_data_free

Detailed Description

This defines a surface.

Implements the MNE Surface (Replaces typedef mneSurfaceOrVolume mneSurface; struct of MNE-C mne_types.h).

Definition at line 76 of file mne_surface_old.h.

Inheritance diagram for MNELIB::MneSurfaceOld:

Member Typedef Documentation

◆ ConstSPtr

typedef QSharedPointer<const MneSurfaceOld> MNELIB::MneSurfaceOld::ConstSPtr

Const shared pointer type for MneSurfaceOld.

Definition at line 80 of file mne_surface_old.h.

◆ SPtr

typedef QSharedPointer<MneSurfaceOld> MNELIB::MneSurfaceOld::SPtr

Shared pointer type for MneSurfaceOld.

Definition at line 79 of file mne_surface_old.h.

Constructor & Destructor Documentation

◆ MneSurfaceOld()

MneSurfaceOld::MneSurfaceOld ( )

Constructs the MNE Surface

Definition at line 54 of file mne_surface_old.cpp.

◆ ~MneSurfaceOld()

MneSurfaceOld::~MneSurfaceOld ( )

Destroys the MNE Surface Refactored: (.c)

Definition at line 60 of file mne_surface_old.cpp.

The documentation for this class was generated from the following files:

src/libraries/mne/c/mne_surface_old.h
src/libraries/mne/c/mne_surface_old.cpp

Public Types

Public Member Functions