Data3DTreeModel provides a tree based data model to hold all information about data which was added to the View 3D. More...

#include <data3Dtreemodel.h>

Public Types
typedef QSharedPointer< Data3DTreeModel >	SPtr

typedef QSharedPointer< const Data3DTreeModel >	ConstSPtr

Public Member Functions
	Data3DTreeModel (QObject *parent=0)

QVariant	data (const QModelIndex &index, int role=Qt::DisplayRole) const

int	columnCount (const QModelIndex &parent) const

QVariant	headerData (int section, Qt::Orientation orientation, int role=Qt::DisplayRole) const

Qt::ItemFlags	flags (const QModelIndex &index) const

QList< FsSurfaceTreeItem * >	addSurfaceSet (const QString &sSubject, const QString &sMriSetName, const FSLIB::SurfaceSet &surfaceSet, const FSLIB::AnnotationSet &annotationSet=FSLIB::AnnotationSet())

FsSurfaceTreeItem *	addSurface (const QString &sSubject, const QString &sSet, const FSLIB::Surface &surface, const FSLIB::Annotation &annotation=FSLIB::Annotation())

QList< SourceSpaceTreeItem * >	addSourceSpace (const QString &sSubject, const QString &sMeasurementSetName, const MNELIB::MNESourceSpace &sourceSpace)

QList< SourceSpaceTreeItem * >	addForwardSolution (const QString &sSubject, const QString &sMeasurementSetName, const MNELIB::MNEForwardSolution &forwardSolution)

MneDataTreeItem *	addSourceData (const QString &sSubject, const QString &sMeasurementSetName, const MNELIB::MNESourceEstimate &tSourceEstimate, const MNELIB::MNEForwardSolution &tForwardSolution, const FSLIB::SurfaceSet &tSurfSet, const FSLIB::AnnotationSet &tAnnotSet)

EcdDataTreeItem *	addDipoleFitData (const QString &sSubject, const QString &sSet, const INVERSELIB::ECDSet &ecdSet)

QList< NetworkTreeItem * >	addConnectivityData (const QString &sSubject, const QString &sMeasurementSetName, const QList< CONNECTIVITYLIB::Network > &networkData)

NetworkTreeItem *	addConnectivityData (const QString &sSubject, const QString &sMeasurementSetName, const CONNECTIVITYLIB::Network &networkData)

BemTreeItem *	addBemData (const QString &sSubject, const QString &sBemSetName, const MNELIB::MNEBem &bem)

SensorSetTreeItem *	addMegSensorInfo (const QString &sSubject, const QString &sSensorSetName, const QList< FIFFLIB::FiffChInfo > &lChInfo, const MNELIB::MNEBem &sensor=MNELIB::MNEBem(), const QStringList &bads=QStringList())

SensorSetTreeItem *	addEegSensorInfo (const QString &sSubject, const QString &sSensorSetName, const QList< FIFFLIB::FiffChInfo > &lChInfo, const QStringList &bads=QStringList())

DigitizerSetTreeItem *	addDigitizerData (const QString &sSubject, const QString &sMeasurementSetName, const FIFFLIB::FiffDigPointSet &digitizer)

SensorDataTreeItem *	addSensorData (const QString &sSubject, const QString &sMeasurementSetName, const Eigen::MatrixXd &matSensorData, const MNELIB::MNEBemSurface &tBemSurface, const FIFFLIB::FiffInfo &fiffInfo, const QString &sDataType)

QPointer< Qt3DCore::QEntity >	getRootEntity ()

Protected Member Functions
SubjectTreeItem *	addSubject (const QString &sSubject)

SensorDataTreeItem *	addCpuSensorData (const QString &sSubject, const QString &sMeasurementSetName, const Eigen::MatrixXd &matSensorData, const MNELIB::MNEBemSurface &tBemSurface, const FIFFLIB::FiffInfo &fiffInfo, const QString &sDataType, const double dCancelDist, const QString &sInterpolationFunction)

SensorDataTreeItem *	addGpuSensorData (const QString &sSubject, const QString &sMeasurementSetName, const Eigen::MatrixXd &matSensorData, const MNELIB::MNEBemSurface &tBemSurface, const FIFFLIB::FiffInfo &fiffInfo, const QString &sDataType, const double dCancelDist, const QString &sInterpolationFunction)

void	initMetatypes ()

Protected Attributes
QStandardItem *	m_pRootItem

QPointer< Qt3DCore::QEntity >	m_pModelEntity

Detailed Description

Data3DTreeModel provides a tree based data model to hold all information about data which was added to the View 3D.

Definition at line 126 of file data3Dtreemodel.h.

Inheritance diagram for DISP3DLIB::Data3DTreeModel:

Member Typedef Documentation

◆ ConstSPtr

typedef QSharedPointer<const Data3DTreeModel> DISP3DLIB::Data3DTreeModel::ConstSPtr

Const shared pointer type for Data3DTreeModel class.

Definition at line 132 of file data3Dtreemodel.h.

◆ SPtr

typedef QSharedPointer<Data3DTreeModel> DISP3DLIB::Data3DTreeModel::SPtr

Shared pointer type for Data3DTreeModel class.

Definition at line 131 of file data3Dtreemodel.h.

Constructor & Destructor Documentation

◆ Data3DTreeModel()

Data3DTreeModel::Data3DTreeModel ( QObject * parent = 0 )

explicit

Default constructor.

Parameters

[in] parent The parent of this class.

Definition at line 89 of file data3Dtreemodel.cpp.

Member Function Documentation

◆ addBemData()

BemTreeItem * Data3DTreeModel::addBemData	(	const QString &	sSubject,
		const QString &	sBemSetName,
		const MNELIB::MNEBem &	bem
	)

Adds BEM data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sBemSetName	The name of the BEM set to which the data is to be added. If it does not exist yet, it will be created.
[in]	bem	The Bem information.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 360 of file data3Dtreemodel.cpp.

◆ addConnectivityData() [1/2]

NetworkTreeItem * Data3DTreeModel::addConnectivityData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const CONNECTIVITYLIB::Network &	networkData
	)

Adds connectivity estimation data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	networkData	The connectivity data.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 333 of file data3Dtreemodel.cpp.

◆ addConnectivityData() [2/2]

QList< NetworkTreeItem * > Data3DTreeModel::addConnectivityData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const QList< CONNECTIVITYLIB::Network > &	networkData
	)

Adds a list of connectivity estimation data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	networkData	The list of connectivity data.

Returns: Returns a lsit with pointers to the added tree items.

Definition at line 316 of file data3Dtreemodel.cpp.

◆ addCpuSensorData()

SensorDataTreeItem* DISP3DLIB::Data3DTreeModel::addCpuSensorData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const Eigen::MatrixXd &	matSensorData,
		const MNELIB::MNEBemSurface &	tBemSurface,
		const FIFFLIB::FiffInfo &	fiffInfo,
		const QString &	sDataType,
		const double	dCancelDist,
		const QString &	sInterpolationFunction
	)

protected

Adds live sensor data for interpolation with the cpu.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	matSensorData	The Sensor Data.
[in]	tBemSurface	The Bem Surface data.
[in]	fiffInfo	The FiffInfo that holds all information about the sensors.
[in]	sDataType	The data type ("MEG" or "EEG").
[in]	dCancelDist	Distances higher than this are ignored for the interpolation.
[in]	sInterpolationFunction	Function that computes interpolation coefficients using the distance values.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

◆ addDigitizerData()

DigitizerSetTreeItem * Data3DTreeModel::addDigitizerData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const FIFFLIB::FiffDigPointSet &	digitizer
	)

Adds digitizer data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	digitizer	The digitizer information.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 452 of file data3Dtreemodel.cpp.

◆ addDipoleFitData()

EcdDataTreeItem * Data3DTreeModel::addDipoleFitData	(	const QString &	sSubject,
		const QString &	sSet,
		const INVERSELIB::ECDSet &	ecdSet
	)

Adds source estimated activation data (dipole fit).

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	ecdSet	The ECDSet dipole data.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 288 of file data3Dtreemodel.cpp.

◆ addEegSensorInfo()

SensorSetTreeItem * Data3DTreeModel::addEegSensorInfo	(	const QString &	sSubject,
		const QString &	sSensorSetName,
		const QList< FIFFLIB::FiffChInfo > &	lChInfo,
		const QStringList &	bads = `QStringList()`
	)

Adds EEG sensor info.

Parameters

[in]	sSubject	The name of the subject.
[in]	sSensorSetName	The name of the sensor set to which the data is to be added. If it does not exist yet, it will be created.
[in]	lChInfo	The channel information used to plot the EEG channels.
[in]	bads	The bad channel list.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 418 of file data3Dtreemodel.cpp.

◆ addForwardSolution()

QList< SourceSpaceTreeItem * > Data3DTreeModel::addForwardSolution	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const MNELIB::MNEForwardSolution &	forwardSolution
	)

Adds a forward solution data to the brain tree model. Convenient function to addBrainData(const QString& text, const MNESourceSpace& tSourceSpace).

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	forwardSolution	The forward solution information.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 230 of file data3Dtreemodel.cpp.

◆ addGpuSensorData()

SensorDataTreeItem* DISP3DLIB::Data3DTreeModel::addGpuSensorData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const Eigen::MatrixXd &	matSensorData,
		const MNELIB::MNEBemSurface &	tBemSurface,
		const FIFFLIB::FiffInfo &	fiffInfo,
		const QString &	sDataType,
		const double	dCancelDist,
		const QString &	sInterpolationFunction
	)

protected

Adds live sensor data for interpolation with a compute shader.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	matSensorData	The Sensor Data.
[in]	tBemSurface	The Bem Surface data.
[in]	fiffInfo	The FiffInfo that holds all information about the sensors.
[in]	sDataType	The data type ("MEG" or "EEG").
[in]	dCancelDist	Distances higher than this are ignored for the interpolation.
[in]	sInterpolationFunction	Function that computes interpolation coefficients using the distance values.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

◆ addMegSensorInfo()

SensorSetTreeItem * Data3DTreeModel::addMegSensorInfo	(	const QString &	sSubject,
		const QString &	sSensorSetName,
		const QList< FIFFLIB::FiffChInfo > &	lChInfo,
		const MNELIB::MNEBem &	sensor = `MNELIB::MNEBem()`,
		const QStringList &	bads = `QStringList()`
	)

Adds MEG sensor info.

Parameters

[in]	sSubject	The name of the subject.
[in]	sSensorSetName	The name of the sensor set to which the data is to be added. If it does not exist yet, it will be created.
[in]	sensor	The sensor surface information in form of a BEM model. Sensor surfaces are internally represented as MNEBem models.
[in]	lChInfo	The channel information used to plot the MEG channels.
[in]	bads	The bad channel list.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 386 of file data3Dtreemodel.cpp.

◆ addSensorData()

SensorDataTreeItem * Data3DTreeModel::addSensorData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const Eigen::MatrixXd &	matSensorData,
		const MNELIB::MNEBemSurface &	tBemSurface,
		const FIFFLIB::FiffInfo &	fiffInfo,
		const QString &	sDataType
	)

Adds live sensor data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	matSensorData	The Sensor Data.
[in]	tBemSurface	The Bem Surface data.
[in]	fiffInfo	The FiffInfo that holds all information about the sensors.
[in]	sDataType	The data type ("MEG" or "EEG").

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 478 of file data3Dtreemodel.cpp.

◆ addSourceData()

MneDataTreeItem * Data3DTreeModel::addSourceData	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const MNELIB::MNESourceEstimate &	tSourceEstimate,
		const MNELIB::MNEForwardSolution &	tForwardSolution,
		const FSLIB::SurfaceSet &	tSurfSet,
		const FSLIB::AnnotationSet &	tAnnotSet
	)

Adds source estimated activation data (MNE or RTC-MUSIC).

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	tSourceEstimate	The MNESourceEstimate.
[in]	tForwardSolution	The MNEForwardSolution.
[in]	tSurfSet	The surface set holding the left and right hemisphere surfaces.
[in]	tAnnotSet	The annotation set holding the left and right hemisphere annotations.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 239 of file data3Dtreemodel.cpp.

◆ addSourceSpace()

QList< SourceSpaceTreeItem * > Data3DTreeModel::addSourceSpace	(	const QString &	sSubject,
		const QString &	sMeasurementSetName,
		const MNELIB::MNESourceSpace &	sourceSpace
	)

Adds source space brain data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMeasurementSetName	The name of the measurement set to which the data is to be added. If it does not exist yet, it will be created.
[in]	sourceSpace	The source space information.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 204 of file data3Dtreemodel.cpp.

◆ addSubject()

SubjectTreeItem * Data3DTreeModel::addSubject ( const QString & sSubject )

protected

Create a subject tree item if the item was not found. This is a convenience function.

Parameters

[in] sSubject The name of the subject.

Returns: Returns a pointer to the first found or created subject tree item. Default is a NULL pointer if no item was found.

Definition at line 534 of file data3Dtreemodel.cpp.

◆ addSurface()

FsSurfaceTreeItem * Data3DTreeModel::addSurface	(	const QString &	sSubject,
		const QString &	sSet,
		const FSLIB::Surface &	surface,
		const FSLIB::Annotation &	annotation = `FSLIB::Annotation()`
	)

Adds FreeSurfer brain data.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMriSetName	The name of the MRI set to which the data is to be added. If it does not exist yet, it will be created.
[in]	surface	FreeSurfer surface.
[in]	annotation	FreeSurfer annotation.

Returns: Returns a pointer to the added tree item. Default is a NULL pointer if no item was added.

Definition at line 177 of file data3Dtreemodel.cpp.

◆ addSurfaceSet()

QList< FsSurfaceTreeItem * > Data3DTreeModel::addSurfaceSet	(	const QString &	sSubject,
		const QString &	sMriSetName,
		const FSLIB::SurfaceSet &	surfaceSet,
		const FSLIB::AnnotationSet &	annotationSet = `FSLIB::AnnotationSet()`
	)

Adds FreeSurfer brain data SETS.

Parameters

[in]	sSubject	The name of the subject.
[in]	sMriSetName	The name of the MRI set to which the data is to be added. If it does not exist yet, it will be created.
[in]	surfaceSet	FreeSurfer surface set.
[in]	annotationSet	FreeSurfer annotation set.

Returns: Returns a QList with the added surface tree items. The ordering. of the list hereby corresponds to the ordering of the input surface set. The list is empty if no item was added.

Definition at line 157 of file data3Dtreemodel.cpp.

◆ data()

QVariant Data3DTreeModel::data	(	const QModelIndex &	index,
		int	role = `Qt::DisplayRole`
	)		const

QStandardItemModel functions

Definition at line 101 of file data3Dtreemodel.cpp.

◆ getRootEntity()

QPointer< Qt3DCore::QEntity > Data3DTreeModel::getRootEntity ( )

Returns the 3D model root entity.

Returns: The model's root entity to acess the scenegraph.

Definition at line 527 of file data3Dtreemodel.cpp.

◆ initMetatypes()

void Data3DTreeModel::initMetatypes ( )

protected

Init the meta types

Definition at line 556 of file data3Dtreemodel.cpp.

Member Data Documentation

◆ m_pModelEntity

QPointer<Qt3DCore::QEntity> DISP3DLIB::Data3DTreeModel::m_pModelEntity

protected

The parent 3D entity for this model.

Definition at line 431 of file data3Dtreemodel.h.

◆ m_pRootItem

QStandardItem* DISP3DLIB::Data3DTreeModel::m_pRootItem

protected

The root item of the tree model.

Definition at line 430 of file data3Dtreemodel.h.

The documentation for this class was generated from the following files:

src/libraries/disp3D/engine/model/data3Dtreemodel.h
src/libraries/disp3D/engine/model/data3Dtreemodel.cpp

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

◆ ConstSPtr

◆ SPtr

Constructor & Destructor Documentation

◆ Data3DTreeModel()

Member Function Documentation

◆ addBemData()

◆ addConnectivityData() [1/2]

◆ addConnectivityData() [2/2]

◆ addCpuSensorData()

◆ addDigitizerData()

◆ addDipoleFitData()

◆ addEegSensorInfo()

◆ addForwardSolution()

◆ addGpuSensorData()

◆ addMegSensorInfo()

◆ addSensorData()

◆ addSourceData()

◆ addSourceSpace()

◆ addSubject()

◆ addSurface()

◆ addSurfaceSet()

◆ data()

◆ getRootEntity()

◆ initMetatypes()

Member Data Documentation

◆ m_pModelEntity

◆ m_pRootItem